| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4460 |
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| Symbol | |
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| ID | 5613387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5448143 |
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| End bp | 5449744 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640935430 |
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| Product | TAP domain-containing protein |
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| Protein accession | YP_001476190 |
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| Protein GI | 157377590 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.726615 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCATG GAAAGCCGCA CGAGTCGGAA ATCAGCATGG CCGACACCAT CACAACCACT
TCCCCCCTAA AGCTCCTCAT GAGCATGATA ATGATTGGCT TTTTGCTTAT GAGCCAGAGT
ACCTTCGCCA AACAAGACTC AAAAATAGGT GAGAGTGAAG CCAGCCACTG CTATGTCGAC
GACCTATCCG AACGTCTCGA GTGCGGCTTT ATTACCGTCC CGGAAGATCG CACTAAGCCA
GATGGAAAAC AGATCGACAT TCATTATGTT GTGCTTCCAG CCATCAAGAA CGGTGCAAAC
TCAGAAGCCT TTCTTGCCAT CGCAGGTGGA CCGGGTCAAT CTGCCATAGA TAATGCGGCG
GGTTTCAGTC GTATGTTTAG CAAGGTACGA CAGAAGAGAG ATATATTACT CATCGATCAG
CGCGGTACGG GTCGCTCGAA TGTGCTTAAC TGTGAGGGAG AAGGTTTTGA GGGGGCCCTG
TCCATCAATG AAGCCGACTT CGATGTAGCC AAAGAAACTC AGGCCTGCCT CGATACACTC
GATGCCGATG TGACCCAGTA TGGTAGCCTT AGTGCTTTAG AAGACTTCGA AGCCGTCCGC
CAGCACCTTG GTTACCAGAA ACTACACCTA TATGGGATCT CTTACGGTAC CCGCATGGCG
CAACTCTACA TGCGTCACTA TCCACAGGTA TTATCCACCG TCACCATAGA TGGCGTGGTT
CCCATGCAGC AAAGCGTGCT AGCTATCGGC AATGCCATCA ACAGGGGCTT CGAGCTACTC
ATTCAGGATT GTGATGAGAA TAAACTCTGT GGCGCACAAT TTCCCCATCT CAAAGAGGAC
CTGCATAAGG TAGATGCAGA GCTGGCTTTA CAACCGGCAA TCAGTCAAGT GAATGATCCG
TTAACCGGAG AGTCCACTCA ACTCACAATG ACGCGCTCTA AGTTTATGGG CGCAATTCGA
ATGGCACTCT ATATGCCAAA CGTGCGTGCG CTGCTCCCCC ATGCCATCAG CGAGGCGGCC
AAGGAGAACT TCCAACCCAT TATGGGGCTC TATGCCCTCA CTATCGATAG CACAGGCATA
GCCATGGGCA TGCACGCCTC CGTCGTGTGT GGCGAAGATT GGCAGAGACT CACGCAAGAG
GAGAGAGATG CAGCTAATCA AACCTATTTC GGTCAAGAGA TGATCACTAA CTTCGAGAAG
TCTTGTGCCA TCTGGAATAT GCCTGCAGTT GACAGCAGTT TCTCTGCACC GATTAGCAGT
AATATACCTA CCCTAGCCCT CTCGGGGCAG ATAGATCCGG CGACGCCACC AAGCTGGGGA
GAGTTAGCCA TGGAAAAACT CACCAACGCG AAACATTTTA TCGCGCCATA CGCAACTCAT
GGCGTGGCTA ACCAATCTTG CGGTAACGAT CTTATCGCCC TACTGGTCGA TACCGGAAGT
GTAAAAGAGA TAGATGGTGA ATGCCTGAAC AAGGATGTGA GTCGTAACTT TTATCTCAAT
GCCAGTACGG TCGAAGCCAT ACCGGCTAAA CCCGATACGC CAACAGAAAC GAAACAAGCG
GATGCTCCCC ACGGAGTAGA GCAAGGAGAT AGTCATGATT AA
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| Protein sequence | MFHGKPHESE ISMADTITTT SPLKLLMSMI MIGFLLMSQS TFAKQDSKIG ESEASHCYVD
DLSERLECGF ITVPEDRTKP DGKQIDIHYV VLPAIKNGAN SEAFLAIAGG PGQSAIDNAA
GFSRMFSKVR QKRDILLIDQ RGTGRSNVLN CEGEGFEGAL SINEADFDVA KETQACLDTL
DADVTQYGSL SALEDFEAVR QHLGYQKLHL YGISYGTRMA QLYMRHYPQV LSTVTIDGVV
PMQQSVLAIG NAINRGFELL IQDCDENKLC GAQFPHLKED LHKVDAELAL QPAISQVNDP
LTGESTQLTM TRSKFMGAIR MALYMPNVRA LLPHAISEAA KENFQPIMGL YALTIDSTGI
AMGMHASVVC GEDWQRLTQE ERDAANQTYF GQEMITNFEK SCAIWNMPAV DSSFSAPISS
NIPTLALSGQ IDPATPPSWG ELAMEKLTNA KHFIAPYATH GVANQSCGND LIALLVDTGS
VKEIDGECLN KDVSRNFYLN ASTVEAIPAK PDTPTETKQA DAPHGVEQGD SHD
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