Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4452 |
Symbol | |
ID | 5613424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5440024 |
End bp | 5441208 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640935422 |
Product | hypothetical protein |
Protein accession | YP_001476182 |
Protein GI | 157377582 |
COG category | [R] General function prediction only |
COG ID | [COG2819] Predicted hydrolase of the alpha/beta superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAGAA ATACCGTTTA TATTATTGCT TTGTCTATAT CAGGTCTGCT GTTCAGCCCT AAGATTTTTG CTGAAAATTC TGCGGCGAAT GTCCACCTGA GTCAGGTGGA GAAGCTCATT GTTTCATCGG AGCAGTTTAA GGAGTCCGCC GAATTTATCG TTACCTTGCC GCCGAGTTAT AGCAAGAACA GTGATAAAGA GTATGTGCTT CTGTTGGACT TTCATCCTCG CAGCCAAGCC TACCTTAGCG GTATGCATGA CTGGATGAGC CATAACGGCG ATTGGCCTTG GCTGAAAACC ATTATCGTAA CAGCGCCCGA TGGGCACAAA GGACTGGGTC TGTTGAAGGT GCAAGCTATC GAAGAGCAGG GCAGTGAACT GTTGTTGGAT TTTATGGAGC AAGAGCTGCT CCCGGCAATT GACAGCAAGT ACCGAACCAA TGGCTTTCGT ATCCTCAACG GTTTTACCGG CAATGCAGGC TTAAGTCTCT ACACCCTGCT CAATCGTCCC GGCCTCTTTA ATGCCTATTT TGCCGCCAGT CCGGTACTGA GCAAAGACTT TGCCTATGTC ATCAAGGATG CCCCCAAGAA ACTCGCCGCC ATGAAAGGCA AGCCAAGGTT TCTGCTGATG AGCACCAGTG ACAGCGGCTT CGAGAAGAGG CAATTAGCCA GCTTTGCTGA GATGGAATCA ATCATAGAGG CGAATGCCAC ATCGAAACTG GATTACCACA TTAAACGCTT CGACGGCACC TACTATATGA CTCAACCTAT ATTGGCAACC GCCTATGGTA TAGAGCTGCT GTTTAATGAT GTTCATCGGG TGTTAAAGCC AGATTCCGAG ATCTCAAGCC AAGGTGCGCA GGCGATACTG GCACACTACC GTTATCTGTC TGAGGAGAAG TACGGTTTCG AGGTGCCCGC CACCGACTCC CTGATAGCCC TGGCCAAAGC CGAGTCGACC AAGGATGCAG CAAAAGGGTT GGCTGTTTAC CAGATTGCAG TGAAGGCTGC GCCCGACTCA CACACGGCCC ATGACGCATT GGCGAACGCC TATGCAGAGG CTGGAGAGTT TGAGTTAGCC ATCAAACATG AGCAACTTGC GTTGAATAAC ACCGAGCATC CATTCTGGAC CAAGAGGTAC TCAGAGAGTC TGGCCGCTTT TGAGGCTAAA AAGGGTGTTC TATAA
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Protein sequence | MLRNTVYIIA LSISGLLFSP KIFAENSAAN VHLSQVEKLI VSSEQFKESA EFIVTLPPSY SKNSDKEYVL LLDFHPRSQA YLSGMHDWMS HNGDWPWLKT IIVTAPDGHK GLGLLKVQAI EEQGSELLLD FMEQELLPAI DSKYRTNGFR ILNGFTGNAG LSLYTLLNRP GLFNAYFAAS PVLSKDFAYV IKDAPKKLAA MKGKPRFLLM STSDSGFEKR QLASFAEMES IIEANATSKL DYHIKRFDGT YYMTQPILAT AYGIELLFND VHRVLKPDSE ISSQGAQAIL AHYRYLSEEK YGFEVPATDS LIALAKAEST KDAAKGLAVY QIAVKAAPDS HTAHDALANA YAEAGEFELA IKHEQLALNN TEHPFWTKRY SESLAAFEAK KGVL
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