| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4432 |
|---|
| Symbol | |
|---|
| ID | 5609640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5416013 |
|---|
| End bp | 5418868 |
|---|
| Gene Length | 2856 bp |
|---|
| Protein Length | 951 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640935402 |
|---|
| Product | peptidase M6, immune inhibitor A |
|---|
| Protein accession | YP_001476162 |
|---|
| Protein GI | 157377562 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4412] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03296] M6 family metalloprotease domain
[TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00957911 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAA AAAACGGTAT TAATCTGCTT TCTACACTTG GGTTATCACT GCTCCTTGCA
ATTAGTAGTG CTCTCTCTCT TCCCGCCGCA GCCGAATACG GGACTATGGC CGATGCCGGT
GTCATTAATA AGGAGCAGAT CCTCTATTGG TTAATTAAAC GAGGTGAGTT GTCAGCCGAA
GCGAGTGAGG CTGAAAAGCG CGCCGCAGTA GCAACCTTTA CTCAACGTGC CAGCGGGTTC
CAGAGTAAGG GAGGGCTCGT TGAGGCGCAA TTTGAAAAGC TAAGACTGAA ATCGAGCGCC
AAGCTTAAGA CTGGAAAAAC TCAGTTGCAG AGGAGCGTTG TAGCCTTCGC CGATGCCGAT
ATCACCAAGA CCGTTAAGGT GCTGGGGGTA TTAGTCGATT TCCCCGATCT TCCCTTTGAT
GACAATCGAC TCACTGCCAG CGACACCCCT ATGTTCTATC CCAGTTATCC GACCGCCCAT
TATCGGGACC TGATGTTCTC GACTACGGGT TTTACCGGCC CTCAGGGGCA AAACCTAATG
ACCGGGTATC AATATTATCA GGCGGTTTCG GGTGATAGCT TCTTTTTTAC CGGGGACGTC
AAGGGTTGGG TGACGGCGGA TAATAACGCC TCATTTTATG GTGGCAACGA TGTCGATAAC
AGTGGTGGTG ACAAGGCGGT ACCGGATCTC GTCAAAGAGG CGGTGACCAA GGTTGTAGCT
GGCATGTCGG CCGCAGAGTT AGCCGGTTAT GACGTTGAAG ATCCCTTCGA TATCGATGGC
GATGGAAATT TCGATGAACC CGATGGTGAT ATCGACCATG TGATGCTGTT TCACTCCAGT
GTCGGTGAAG AGGCCGGTGG TGGCGTACTT GGGACCGATG CTATCTGGTC TCACCGTTTT
TTCGTCTACA CAGGCGGCAA TCCGGGTTAC ACCGTTCCGG GAACCGGTAA GAAAGTATTT
GGTTACACCG TGCAGCCCAT AGACGCTGCG GCGGGTGTCG TGGTGCATGA ATTTGGCCAT
GATCTGGGCT TGCCCGATGA GTATGACACC ACTAACACGG GTGACGGCTC CCCCGTGGGT
TCCTGGTCGG TGATGTCGGG TGGTAGTTGG ACTGGCTTGC CTGCAGGGAC ACAACCTATA
GGCTTTAGCC CCTATGCTAA GTCATACCTG CAACAAAAGT ATAAGGGAAG ATGGGTAACG
GAACAGGAGA TATTGCTCGG TAATATTCCC AGGACAGGCC TGGATGTTCA GCTGGTCGAA
GCGGTGAATC ATGCTCAGAC AAATCAGATA TCGATTCCTT TGCCCACAGC TGCTATTCCT
TTTAAGCAGC CCTATGGGGG CAGCTATCAG TACTATTCGG GTCAGGGACA TCTTATCAAC
AATGCCGCCT CATTCGAGGT AGACCTCCCA AGCACAACCC CCCTTACCTT GAAGATGAAG
GCGCACTGGA ACATCGAGCT GGATTATGAT TACGCCCAGG TGATGGTCGA CGGTGTCGTC
ATTGCCGGTA ATCACACTAA GGCGAGCAAT ACCATCAACG GGGCCAGAAA CATCATCACC
GGCAACTCGG CCGATATTGC GGGTGCCGAG GGAAGTGATA ACTGGGTCGA TCTTGAGTAT
GATCTGAGTG CCTATGCCGG TCGAGCCAAT GCTCAGATAA GTATCATCTA TCGTACCGAC
GAAGCCGTTG GAGATTACGG ACTGGCTATC GATAACCTCG TTATCATGGC GGCAGCCTCA
CAGGCTTACC TTGATGATGC GGAAACACCA GCCACCATGA GTTTAGCCGG CTTTTCCAGA
ATAGATAGCC AGCGTCCCGG TGACGCCCGT CGTTATATCA TCCAGCTACG TAGCCATAAC
GGTGTAGATG CGGGTTTACC CAGCCATTCT TATGAGCCCG GAGTCTTGCT ATGGTTAGAA
AACTTCAGTT ATTCAGATAA TAACTCCAGT GAACATGCCG GCGTGGGCTT AATCGGCGTC
GTCGATGCCG ATCAGAATCT GATCGGGAAT AACAGTACCG ATATACAGAT CCGCGATGCC
ACATTCAGCA TGTTCAACCA GTCGAGCTAT TTTGGTGATG AGCACCTGAC ATCTGTCTCT
CTGTTTGATG ACAATTTGGA TTACAGCGCC CCACTCAAAC CTCAGGCCGG TATTATCTTG
CCTGAGTTAG GTCTGACAAT GGAGGTCGTA GCGCAGAGTA ACGACTCGAG CAGTGCTACC
GTGCGCTTGA AATATGCCGA AGGTGTGACC CCTGAGCCTG AGGCGCTTAG TGCAACCATT
ACCGCTCAGC AGGCGGCGGG AACGGTAAGC TTCAGCGCTG CTGTGACCGG AGGAGAGGGA
AGTTACACCT ATGCCTGGGA GTTTGGTGTC ATTGGTGCAA GCAGCACGCT GGCTAATCCC
ACCTATACCT ACAGTGAGTC AAATGACTAT GCGGTTTCCC TGCTGGTTAC CGATAGCACA
GGTGCGACAG CCAGTGATCT GCTGTTAATT AACGTTCAGG TTCCTCCTAC CGCAAACTTT
AGTTATGTCA GTGATGATCT TAGTATCACA CTGAGTAACG CCTCGAGTGC GGGAGTGGGT
GAGCTCAGCT ACCTGTGGAG TTTCGGTGAT GGGCAGACGA GTACCTTGTT GTCGCCCAGC
CATATCTATG CCAATGAGGG CAGCTATACA GTCTCGCTTG CGGTGACCGA CGAAGCTAAC
AATGTGAGCA CCTTCTCTAC GCTGGTTACA GTGACTGCAG CTGTGGTTGT GCCGCCGGTG
ACTCCATCGA CAGATTCGGG ATCCGGTGGG GGAAGTCTGA GTTGGTTTAG CCTCGGGCTA
CTCGCAATAT TTGGTTTAAG AAGACGGTAC TCTTAG
|
|---|
| Protein sequence | MKRKNGINLL STLGLSLLLA ISSALSLPAA AEYGTMADAG VINKEQILYW LIKRGELSAE
ASEAEKRAAV ATFTQRASGF QSKGGLVEAQ FEKLRLKSSA KLKTGKTQLQ RSVVAFADAD
ITKTVKVLGV LVDFPDLPFD DNRLTASDTP MFYPSYPTAH YRDLMFSTTG FTGPQGQNLM
TGYQYYQAVS GDSFFFTGDV KGWVTADNNA SFYGGNDVDN SGGDKAVPDL VKEAVTKVVA
GMSAAELAGY DVEDPFDIDG DGNFDEPDGD IDHVMLFHSS VGEEAGGGVL GTDAIWSHRF
FVYTGGNPGY TVPGTGKKVF GYTVQPIDAA AGVVVHEFGH DLGLPDEYDT TNTGDGSPVG
SWSVMSGGSW TGLPAGTQPI GFSPYAKSYL QQKYKGRWVT EQEILLGNIP RTGLDVQLVE
AVNHAQTNQI SIPLPTAAIP FKQPYGGSYQ YYSGQGHLIN NAASFEVDLP STTPLTLKMK
AHWNIELDYD YAQVMVDGVV IAGNHTKASN TINGARNIIT GNSADIAGAE GSDNWVDLEY
DLSAYAGRAN AQISIIYRTD EAVGDYGLAI DNLVIMAAAS QAYLDDAETP ATMSLAGFSR
IDSQRPGDAR RYIIQLRSHN GVDAGLPSHS YEPGVLLWLE NFSYSDNNSS EHAGVGLIGV
VDADQNLIGN NSTDIQIRDA TFSMFNQSSY FGDEHLTSVS LFDDNLDYSA PLKPQAGIIL
PELGLTMEVV AQSNDSSSAT VRLKYAEGVT PEPEALSATI TAQQAAGTVS FSAAVTGGEG
SYTYAWEFGV IGASSTLANP TYTYSESNDY AVSLLVTDST GATASDLLLI NVQVPPTANF
SYVSDDLSIT LSNASSAGVG ELSYLWSFGD GQTSTLLSPS HIYANEGSYT VSLAVTDEAN
NVSTFSTLVT VTAAVVVPPV TPSTDSGSGG GSLSWFSLGL LAIFGLRRRY S
|
|---|
| |