Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4404 |
Symbol | |
ID | 5609712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5383782 |
End bp | 5385698 |
Gene Length | 1917 bp |
Protein Length | 638 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640935374 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001476134 |
Protein GI | 157377534 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0156105 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTTA ATATGCTCAC AATTAAACAA AAGATATTGC TTACGGTGAC GCTCGCCGTG TTGTTATCCA CTATTCTGGT TGGAGTGCTC AGTCAGCGCA GTGCGAAGGA GATTGTTGAA CAGAGAATGT TAGGCTCTGA GATGCCAAAC ATGCTACAGC AGATCCGCAA CAAGGTTGAA CTCGATATTT CAACCTTAAT GAATGCCGCC GAGCAACTTG CAAATAGCCG CATGTTAATC CAATGGTTAG AAGATGGACG ACCAGCAGAA AGTGAAAGCT TAGTCACCAA CCAGCTTAAA GATATCACCC AGCAGTATGG TTTAGCACAA GCATCATTCG CAGATCGCGA AACTGCCGCC TATTATACTC AGGACGGTTT CTTGCGTGAA CTCACTCCAT CTCAAGATGG CTGGTTCTTC GATTATAAAA ACAGTGGCAC GGAGCGCATG CTCAATGTCT TTACCGAAGC CAATGGCGAT GTGAAGTTGT TCATAAACTA TCAACAACCT AATGGCCGTG GCTTAGTCGG ATTGGCGAAG TCACTCGATG ACATGGTCAG GTTACTCGCC TCCTTTAAAA TTGAAGAGAC GGGCTTTGTT TATCTCGTCG ACGCTAAAGG CCAGGTAAAA CTGCATCAGG ATACGTCTAA AATCGGCAAT GCCGATCTCA ATAGCTTCTA CCGAGACAGC AACACCAATA GCCTGCTTAA TCGCAGCGAC TTCAGTTTAC TGAAAACCGA AGTCGATGGT GAGACTATGC TCGTCGCCAG TAGTTATATC CCATCGATGA ATTGGTATTT GATTGCACAG GTACCCGAAG GTGAGGTTTT TGCCCTGCTT GAAGAGTCTG CCTACAAGAT CTTAATCTGG ACACTGCTGA TTGCCGCAGG CTTTATCGTA TTGGCCACTT TTGTTGCCGG CTCAGTCAGT CGCCCCATAT CCGTCGTTGC CTCTATGCTG CAAAATATTG GTGAAGGTGA AGGCGACTTG CGTCAACGCC TGCCCGTCGA AGGTAATGAT GAACTCACTC AGCTCGCAAA AGGATTTAAC AGCTTCATCA GTAAAATCCA AGCCTCAATT ATTGAAGTAG CCGAAACCAG TGAGCAATTA AGCCTATCGG CTAAAGATGT CGCCAATCAG GCACAGCAAA CCCTATCCGA TAGTCAATTA CAGAAAGATC AGACCATGAT GGTGGTTACC GCCATCAATG AGATGGGAGC AACGGTTAAC GAAATCGCCG GTAATGCTGC TCAGGCCGCC GATACCGCAA AAAATGCCGA TACCGAATCC AATACAGGTC AGGTTGTCGT CACACGTGCT CGCGATACCA TCAACCAGCT GTCGAATGAT GTAGAGCAAG TCGGAGAGGT CATTGAATCT TTAGCGACTC ATACTAAGTC GATTGGCGGT ATTTTAGATG TTATCCGCGC CGTATCTGAG CAGACCAACT TACTCGCGCT GAATGCTGCA ATCGAAGCGG CACGAGCAGG TGAAGCCGGA CGTGGATTTG CCGTCGTTGC CGATGAAGTT CGTAACCTTG CCTCGCGCAC AGCAGAGTCG ACCAACGAAG TGCAGATCAT GATCGATAAG TTGCAGTCTG AGGCCAGCAG AGCTGTCGAT GCCATGACGC AGAGTCGTTC TCGCTCGATT GAAGGTGTCA CAGCCGTCGA TGAGGCGAGT CAGTCGCTAT CGGGGATCAG TGAGCAAATT GGTCAGATTA CAGACATGAA CATTCAGGTG GCTGCAGCGA CTGAAGAACA GTCAACCGTG GTTGAAGATA TCAACCGTAA TGTCACCGAG ATCAGTGACA TTACACAAAG AACTGCTGAC ACCTCTGAAG CTGTTGCTCA AGCGAGCCAA TCCCTCAATC AGCTAGCCAA CCGCTTGGAT ACCTTAGTGG CGGGCTTTAA GGTATAA
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Protein sequence | MKFNMLTIKQ KILLTVTLAV LLSTILVGVL SQRSAKEIVE QRMLGSEMPN MLQQIRNKVE LDISTLMNAA EQLANSRMLI QWLEDGRPAE SESLVTNQLK DITQQYGLAQ ASFADRETAA YYTQDGFLRE LTPSQDGWFF DYKNSGTERM LNVFTEANGD VKLFINYQQP NGRGLVGLAK SLDDMVRLLA SFKIEETGFV YLVDAKGQVK LHQDTSKIGN ADLNSFYRDS NTNSLLNRSD FSLLKTEVDG ETMLVASSYI PSMNWYLIAQ VPEGEVFALL EESAYKILIW TLLIAAGFIV LATFVAGSVS RPISVVASML QNIGEGEGDL RQRLPVEGND ELTQLAKGFN SFISKIQASI IEVAETSEQL SLSAKDVANQ AQQTLSDSQL QKDQTMMVVT AINEMGATVN EIAGNAAQAA DTAKNADTES NTGQVVVTRA RDTINQLSND VEQVGEVIES LATHTKSIGG ILDVIRAVSE QTNLLALNAA IEAARAGEAG RGFAVVADEV RNLASRTAES TNEVQIMIDK LQSEASRAVD AMTQSRSRSI EGVTAVDEAS QSLSGISEQI GQITDMNIQV AAATEEQSTV VEDINRNVTE ISDITQRTAD TSEAVAQASQ SLNQLANRLD TLVAGFKV
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