Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4403 |
Symbol | |
ID | 5609711 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5381835 |
End bp | 5383484 |
Gene Length | 1650 bp |
Protein Length | 549 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640935373 |
Product | electron-transferring-flavoprotein dehydrogenase |
Protein accession | YP_001476133 |
Protein GI | 157377533 |
COG category | [C] Energy production and conversion |
COG ID | [COG0644] Dehydrogenases (flavoproteins) [COG2440] Ferredoxin-like protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00273823 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAACGCG AATCGATGGA GTTCGATGTC GTCATCGTTG GAGCCGGCCC CGCCGGACTG GCTACAGCGT GTCGACTAAT GCAGGTATCG AAAGACAGTG GCCAGGAAAT TACTGTCTGT GTTGTAGAGA AAGGCTCAGA GGTTGGAGCT CATATTCTTT CAGGCGCGGT ATTTGAGCCC AAAGTGCTGA GTGAGCTATT CCCCGACTGG CATGAAAAAG GCGCACCACT TCACACAGCC GTCAAATCTG ATGAGATCCA TATGTTAGGC TCGGCGACCG CTTCACGCGC CATGCCTCAC TCTCTTCTGC CAAAAACGAT GCATAATGAA GGTAACTACA TTATTAGCGT AGGCAACCTG GCACGCTGGC TCGCCGAACG CGCCGAAGAG CTTGGCGTCG AAATATTTCC GGGCTTTCCG GCAAGTGAAC TGCTCTTTAA TGAAGATGGC AGTGTAAAAG GTATCTTGAT AGGCGATATG GGCATCGGTG CCGATGGAGA GCCTAAAGAT AGCTTTGAGC CAGGTATGGA GCTTCACGCA AAATATACTG TCTTCAGTGA AGGTTGCCGC GGCCATTTAG GCAAGCTACT CATCGAGAAG TATCACTTAG ATAATGGCAA GACGCCACAG CACTACGGCT TAGGCTTTAA AGAGATCTGG AAAGTTCCCA GCGAACAACA TGAGCAAGGC AAGGTGGTTC ATACCGGCGG CTGGCCGTTA ACCGAAGGCG CGTCCGGTGG TGGTTACCTC TATCACCTCG AAGATAATCA AATCGCAGTG GGTCTTATTG TCGATCTGAA TTACCAAAAC CCACACCTGA GTCCATTCGA TGAGTTCCAG CGTTATAAGA CTCACCCGGT CATCTCGAAA TACCTGACCG GCGGCGAGCG CTTAAGCTAT GGTGCACGTG CCATCACTAA AGGTGGCTTA AACTCCCTAC CTAAGATGAG CTTCCCTGGA GGACTTATTA TTGGTTGTAA TGCCGGTACC TTAAACTTTG CTAAGGTCAA AGGTACTCAT ACAGCAATGA AAAGCGGCAT GTTGGCGGCT GAAACAATCG CACAGGCGCT TCTGGCTGGG GTAGAGGGTG GTAAAGATCT CGACTGTTTC AATGACAGGT TCACAGAGAG CTGGTTACAG GATGAGTTAT ATAAGTCACG TAACTTCGGC CCGGCAATGC ATAAATTTGG TACCTACCTC GGTGGCGCCT TCAACTATAT TGACCAAAAC TGGTTTGGTG GCAAGTTCCC TATCACCTTA AGGGATGAGA AACCCGATCA TACTCAAATG GCAGACATAA ACAGCTATAG TAAGATCGAT TACCCCAAAC CTGACGGAAA GCTGAGTTTC GATAAGCTCT CTTCGGTTTA CCTGTCAAAT ACCTTCCACG AAGAAGATCA GCTATGTCAT CTTCGACTCA AGGATGCACG CATTCCTATC GACGTGAACT TAGTTAAGTT TGATGAACCC GCTCAGCGCT ATTGTCCTGC CGGGGTTTAT GAAGTTATTG AAGAGGAAGG TGAAAGCAAG TTCGTGATCA ATGCTCAAAA CTGCATTCAC TGTAAAACCT GCGATATCAA AGATCCCAGC CAAAATATCA CCTGGGTCAC CCCTGAAGGT GGCGGTGGAC CAAACTACCC GAATATGTAG
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Protein sequence | MERESMEFDV VIVGAGPAGL ATACRLMQVS KDSGQEITVC VVEKGSEVGA HILSGAVFEP KVLSELFPDW HEKGAPLHTA VKSDEIHMLG SATASRAMPH SLLPKTMHNE GNYIISVGNL ARWLAERAEE LGVEIFPGFP ASELLFNEDG SVKGILIGDM GIGADGEPKD SFEPGMELHA KYTVFSEGCR GHLGKLLIEK YHLDNGKTPQ HYGLGFKEIW KVPSEQHEQG KVVHTGGWPL TEGASGGGYL YHLEDNQIAV GLIVDLNYQN PHLSPFDEFQ RYKTHPVISK YLTGGERLSY GARAITKGGL NSLPKMSFPG GLIIGCNAGT LNFAKVKGTH TAMKSGMLAA ETIAQALLAG VEGGKDLDCF NDRFTESWLQ DELYKSRNFG PAMHKFGTYL GGAFNYIDQN WFGGKFPITL RDEKPDHTQM ADINSYSKID YPKPDGKLSF DKLSSVYLSN TFHEEDQLCH LRLKDARIPI DVNLVKFDEP AQRYCPAGVY EVIEEEGESK FVINAQNCIH CKTCDIKDPS QNITWVTPEG GGGPNYPNM
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