| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4390 |
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| Symbol | |
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| ID | 5611349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5371975 |
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| End bp | 5372649 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935360 |
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| Product | pseudouridine synthase Rlu family protein |
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| Protein accession | YP_001476120 |
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| Protein GI | 157377520 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000480203 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGTACCAGA TAATTGCAGA TGAAGCTGAT TTTTTAGTGA TATCTAAATC CCACGATGTC
CACTTTCACA GTCAGGATGG GACGGCAGGG GTTATGGCCC AGGTTGAACA AGATCTCGGG
GTGAAACTCT TCTCGGTTCA TCGCCTCGAC ACCCTGACTT CCGGGTTATT GTTGTTTGCC
AAGAGTAGTC GGGCCGCAGC CGAGTTTACG CAGCTCTTCA CTGAACATAA GGTTCAGAAA
TATTACGTGG CGATAGCGAA AGGAAAACCA AAGAAGAAGC AAGGTTGGGT GGTCGGAGAT
ATGGCCAAAT CTCGTCGCAG CATGTACAAG CTAATGCGTA CGATGGAGAA CCCTGCGATG
ACACAGTTTT TTTCTCAATC TGTTGCCGAA GGCGTTAGGT TGTATCTGCT TAAACCTTTG
AGCGGAAAGA CCCATCAATT AAGGGTGGCA CTTGCCAGTA TAGGCGTGCC GATTTTAGGC
GATAGGCTTT ACGGTGGCGG CGAGGCCGAC CGGGGCTACC TGCATGCTTT TAGCTTAAGT
TTTATCTTTC GCGCTAAAGC GTACCAATAC TTGAACTACC CGGCGCAAGG CGCTGAATTT
ACAACTCCTG ATGCAATTAA GCAGTTGCAA ATATGGTCGG AGCCTGAGAA GTTAGATTGG
CCAAAACGAA AATGA
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| Protein sequence | MYQIIADEAD FLVISKSHDV HFHSQDGTAG VMAQVEQDLG VKLFSVHRLD TLTSGLLLFA
KSSRAAAEFT QLFTEHKVQK YYVAIAKGKP KKKQGWVVGD MAKSRRSMYK LMRTMENPAM
TQFFSQSVAE GVRLYLLKPL SGKTHQLRVA LASIGVPILG DRLYGGGEAD RGYLHAFSLS
FIFRAKAYQY LNYPAQGAEF TTPDAIKQLQ IWSEPEKLDW PKRK
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