| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4382 |
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| Symbol | |
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| ID | 5613502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5366388 |
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| End bp | 5366873 |
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| Gene Length | 486 bp |
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| Protein Length | 161 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935352 |
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| Product | sigma-24 (FecI-like) |
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| Protein accession | YP_001476112 |
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| Protein GI | 157377512 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0954619 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGTCTC GCGAGCAGCT TCACGGCCTG TATCGTTACT GTTTCTGTTT AACGACCGAA
CGCGGAAGTG CGGAAGATCT ACTGCAAACG TCGCTGGAGA AGTGGATTCG ACGGGGTAAA
GAGGTTGAGT ATTCCCATGC CTACATAAGG AAGATCATTC GTAATCAATT TGTCGATGAT
TGCCGTCGCA AACAGAAGGT GGCATTCGAG TCTATCGAAG AGCATGCGCC GATTTTACTC
GATGAAACGT CTTTAGAGAC ATTGCAGATA CAGCATCACC TCATTGAACA AGTGCTTAAT
TTATTGAACT CTGCCGAACG AGAGGTGCTC TACCTGTGGG CCATCGATGG CTTTAGCGCA
TCAGAAATCA GCGAAGATCT TAATCAGCCC CGAGGGACGA TTCTGTCCCG TTTACACCGA
ATAAAGCAAA AGGTTGCCGA TGCGAGCGAA GAGCAGAAGA GGCGTTTGTT CGGGGCTTCA
TCATGA
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| Protein sequence | MLSREQLHGL YRYCFCLTTE RGSAEDLLQT SLEKWIRRGK EVEYSHAYIR KIIRNQFVDD
CRRKQKVAFE SIEEHAPILL DETSLETLQI QHHLIEQVLN LLNSAEREVL YLWAIDGFSA
SEISEDLNQP RGTILSRLHR IKQKVADASE EQKRRLFGAS S
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