Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4365 |
Symbol | |
ID | 5610744 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5341886 |
End bp | 5343733 |
Gene Length | 1848 bp |
Protein Length | 615 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640935335 |
Product | carboxypeptidase |
Protein accession | YP_001476095 |
Protein GI | 157377495 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2866] Predicted carboxypeptidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCTTCA AGCACTTATC AGCCGCCATC TTAATTAGCC TTTCAAGCTC CAGCGTACTC GCTAGCGATG AAGTGACCTC CCAGTTGGTT GAGCCCCAAA TAGCCACAAC TTATATCAAC GATGCCATAC TGCCACCAGC CATCGAATGG CATGGCAAGA GTGAAGCCCT GCTCCTGGAT GCAGATGATG AATGGGCCAC ACCATTCGAA CAAAACGGCC TTAAGACGAG TCCAAGCTAT GATAAAACCT TCGCCTGGCT CGATAAACTC ATTGAACAAA CGGATAAACT GAAAAAGGTC AGCCTGGGTA AGAGCCCGCA AGGACGTGAC ATCTGGATGA TTATCGCATC GAGTGAAGGT GCAGGCTCTC CAGAGGAGTT ACAGAAAAAT GGGAAGGCCA GCGTACTGGT GCAGGCGGGA ATACACTCCG GAGAGATCGA CGGCAAAGAT GCCGGCATGA TGCTGTTAAG AGATATCGTT ATCGGTGATA AAGGTGCCCT ACTCGATAAT GCCAACCTTC TATTTGTCCC TATTTTTAGT GTCGATGCCC ATGAACGTTC GACCCAATAT AACCGGGTCA ATCAACGCGG ACCAGTGAAT ATGGGGTGGC GCACCACATC AAAGAACCTC AACCTGAACC GTGACTATGC CAAGGCCGAT GCCCTTGAGA TGCAACATAT GCTGCACGCC ATCAATGAGT GGCAACCGGC TCTCTATATC GATGTGCATG TCACCGATGG CATAGATTAC CAGTACGATG TCACCTTCGG CTACAACCAG CCCCAGGGGC TAAGTCCGGC CAGTTACCGC TGGCTTGAGC AGAGCTATCG CCCGGCGATA GAGGCTGAAC TCTCGGCTCA GGGGCACATT CCGGGGCAGT TGATATTTGC CCTCGATAAT ACCGACATAA CCAAAGGTAT GTCGCTGTGG AATCCAAGCC CCAGATATTC AAACGGCTAT GGCGATGCCC GCCACCTGCC GACCATTTTA ATCGAAAATC ACAGCCTGAA ACCCTTCAAG CAGCGCGTTC TTGGCACCTA CGTCATGCTG GAGGCAACGC TCAAAACGGT TAGCGAACAA TCTACAAAGC TTAGATCTGC CATTCAGCAA GATAAGTACA GCTACTCACC ACAGCTCACC CTTACCTGGA AGGAGAAGCA ACAGGAGAAG GGTTGGGATT TTAAAGGAAT AAGTTACCGA TTAGAGCAAA GTGCTATCAG TGGTAATGAT GTCGTGCGTT GGACCGGTGA GCCTAAACTC TACCCCAATC TGCCGGTCAT GGGTAACTCA GTCGCAGACA TTCGGGTGCA CCGCCCAAGC GCCTATTACA TACCACCACA ATGGGCTGAC GTTATCAAAA GGCTTGATAT TCACGGTATA CGCATGACCC GTTTAGAAAC CGCGACTCAA TTAAGTGTCG ATCAATACCA CCTGAGTCAG CCGGTTTTTT CAGGTAAGGA CTACGAGGGC CGACAGCGTG TAAGCGCCCA GGCAGTGCTC AACCCAATCG ATACCTTACT TCCGGTGGGC ACCGTCAAGA TAGATACCCG ACAACCCCTT GGCGACCTTG CCATTTTATT GCTTGAGCCT CAATCGCCAG ACTCCCTATT GCAATGGGGA TTTTTCAATC CAATATTTAC CAGAACGGAA TACATTGAAA ACTATGCCGT TGAGCCTTTA GCGGCGCAGA TGCTACAGGA GAATCCAAAG CTACAACAGG CATTTAATGA AGCACTCAAA GATGAAGCAT TCGCCACCGA CCCCAAGGCG CGTTTACGCT GGTTTTATCA AAGAAGTCCT TACTTCGATG ATAACTATGA GAAATACCCA GTCTTGAGAC AAAGGTAA
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Protein sequence | MRFKHLSAAI LISLSSSSVL ASDEVTSQLV EPQIATTYIN DAILPPAIEW HGKSEALLLD ADDEWATPFE QNGLKTSPSY DKTFAWLDKL IEQTDKLKKV SLGKSPQGRD IWMIIASSEG AGSPEELQKN GKASVLVQAG IHSGEIDGKD AGMMLLRDIV IGDKGALLDN ANLLFVPIFS VDAHERSTQY NRVNQRGPVN MGWRTTSKNL NLNRDYAKAD ALEMQHMLHA INEWQPALYI DVHVTDGIDY QYDVTFGYNQ PQGLSPASYR WLEQSYRPAI EAELSAQGHI PGQLIFALDN TDITKGMSLW NPSPRYSNGY GDARHLPTIL IENHSLKPFK QRVLGTYVML EATLKTVSEQ STKLRSAIQQ DKYSYSPQLT LTWKEKQQEK GWDFKGISYR LEQSAISGND VVRWTGEPKL YPNLPVMGNS VADIRVHRPS AYYIPPQWAD VIKRLDIHGI RMTRLETATQ LSVDQYHLSQ PVFSGKDYEG RQRVSAQAVL NPIDTLLPVG TVKIDTRQPL GDLAILLLEP QSPDSLLQWG FFNPIFTRTE YIENYAVEPL AAQMLQENPK LQQAFNEALK DEAFATDPKA RLRWFYQRSP YFDDNYEKYP VLRQR
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