Gene Ssed_4365 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4365 
Symbol 
ID5610744 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5341886 
End bp5343733 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content50% 
IMG OID640935335 
Productcarboxypeptidase 
Protein accessionYP_001476095 
Protein GI157377495 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2866] Predicted carboxypeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTTCA AGCACTTATC AGCCGCCATC TTAATTAGCC TTTCAAGCTC CAGCGTACTC 
GCTAGCGATG AAGTGACCTC CCAGTTGGTT GAGCCCCAAA TAGCCACAAC TTATATCAAC
GATGCCATAC TGCCACCAGC CATCGAATGG CATGGCAAGA GTGAAGCCCT GCTCCTGGAT
GCAGATGATG AATGGGCCAC ACCATTCGAA CAAAACGGCC TTAAGACGAG TCCAAGCTAT
GATAAAACCT TCGCCTGGCT CGATAAACTC ATTGAACAAA CGGATAAACT GAAAAAGGTC
AGCCTGGGTA AGAGCCCGCA AGGACGTGAC ATCTGGATGA TTATCGCATC GAGTGAAGGT
GCAGGCTCTC CAGAGGAGTT ACAGAAAAAT GGGAAGGCCA GCGTACTGGT GCAGGCGGGA
ATACACTCCG GAGAGATCGA CGGCAAAGAT GCCGGCATGA TGCTGTTAAG AGATATCGTT
ATCGGTGATA AAGGTGCCCT ACTCGATAAT GCCAACCTTC TATTTGTCCC TATTTTTAGT
GTCGATGCCC ATGAACGTTC GACCCAATAT AACCGGGTCA ATCAACGCGG ACCAGTGAAT
ATGGGGTGGC GCACCACATC AAAGAACCTC AACCTGAACC GTGACTATGC CAAGGCCGAT
GCCCTTGAGA TGCAACATAT GCTGCACGCC ATCAATGAGT GGCAACCGGC TCTCTATATC
GATGTGCATG TCACCGATGG CATAGATTAC CAGTACGATG TCACCTTCGG CTACAACCAG
CCCCAGGGGC TAAGTCCGGC CAGTTACCGC TGGCTTGAGC AGAGCTATCG CCCGGCGATA
GAGGCTGAAC TCTCGGCTCA GGGGCACATT CCGGGGCAGT TGATATTTGC CCTCGATAAT
ACCGACATAA CCAAAGGTAT GTCGCTGTGG AATCCAAGCC CCAGATATTC AAACGGCTAT
GGCGATGCCC GCCACCTGCC GACCATTTTA ATCGAAAATC ACAGCCTGAA ACCCTTCAAG
CAGCGCGTTC TTGGCACCTA CGTCATGCTG GAGGCAACGC TCAAAACGGT TAGCGAACAA
TCTACAAAGC TTAGATCTGC CATTCAGCAA GATAAGTACA GCTACTCACC ACAGCTCACC
CTTACCTGGA AGGAGAAGCA ACAGGAGAAG GGTTGGGATT TTAAAGGAAT AAGTTACCGA
TTAGAGCAAA GTGCTATCAG TGGTAATGAT GTCGTGCGTT GGACCGGTGA GCCTAAACTC
TACCCCAATC TGCCGGTCAT GGGTAACTCA GTCGCAGACA TTCGGGTGCA CCGCCCAAGC
GCCTATTACA TACCACCACA ATGGGCTGAC GTTATCAAAA GGCTTGATAT TCACGGTATA
CGCATGACCC GTTTAGAAAC CGCGACTCAA TTAAGTGTCG ATCAATACCA CCTGAGTCAG
CCGGTTTTTT CAGGTAAGGA CTACGAGGGC CGACAGCGTG TAAGCGCCCA GGCAGTGCTC
AACCCAATCG ATACCTTACT TCCGGTGGGC ACCGTCAAGA TAGATACCCG ACAACCCCTT
GGCGACCTTG CCATTTTATT GCTTGAGCCT CAATCGCCAG ACTCCCTATT GCAATGGGGA
TTTTTCAATC CAATATTTAC CAGAACGGAA TACATTGAAA ACTATGCCGT TGAGCCTTTA
GCGGCGCAGA TGCTACAGGA GAATCCAAAG CTACAACAGG CATTTAATGA AGCACTCAAA
GATGAAGCAT TCGCCACCGA CCCCAAGGCG CGTTTACGCT GGTTTTATCA AAGAAGTCCT
TACTTCGATG ATAACTATGA GAAATACCCA GTCTTGAGAC AAAGGTAA
 
Protein sequence
MRFKHLSAAI LISLSSSSVL ASDEVTSQLV EPQIATTYIN DAILPPAIEW HGKSEALLLD 
ADDEWATPFE QNGLKTSPSY DKTFAWLDKL IEQTDKLKKV SLGKSPQGRD IWMIIASSEG
AGSPEELQKN GKASVLVQAG IHSGEIDGKD AGMMLLRDIV IGDKGALLDN ANLLFVPIFS
VDAHERSTQY NRVNQRGPVN MGWRTTSKNL NLNRDYAKAD ALEMQHMLHA INEWQPALYI
DVHVTDGIDY QYDVTFGYNQ PQGLSPASYR WLEQSYRPAI EAELSAQGHI PGQLIFALDN
TDITKGMSLW NPSPRYSNGY GDARHLPTIL IENHSLKPFK QRVLGTYVML EATLKTVSEQ
STKLRSAIQQ DKYSYSPQLT LTWKEKQQEK GWDFKGISYR LEQSAISGND VVRWTGEPKL
YPNLPVMGNS VADIRVHRPS AYYIPPQWAD VIKRLDIHGI RMTRLETATQ LSVDQYHLSQ
PVFSGKDYEG RQRVSAQAVL NPIDTLLPVG TVKIDTRQPL GDLAILLLEP QSPDSLLQWG
FFNPIFTRTE YIENYAVEPL AAQMLQENPK LQQAFNEALK DEAFATDPKA RLRWFYQRSP
YFDDNYEKYP VLRQR