| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4357 |
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| Symbol | |
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| ID | 5609715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5332390 |
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| End bp | 5333964 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935327 |
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| Product | general secretory pathway protein E |
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| Protein accession | YP_001476087 |
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| Protein GI | 157377487 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.555593 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAGTG AGACTCAAGC CTCTCACAAT GATGAGCTGG CGCAAGTGAC CGATGAGCTT
GGGCTGGCAG TCGAAAGTGA AACCGATGAG GTGTTTCACT CCACGAGTAA GGAGCGTTTA
CCTTTTGCCT TTGCACATCG CTTCGAAGTG GTACTGGATA GTGTAAATGA GCCGGGTCTT
ACCCTGTTTC ATACCGCTTC CACGCCAGTC GAAGCTTTAC TCGAGGCTCG CCGCTATACA
GGTAAGGAGC TGCCTCTGGT TCAGCTTGCG CCGGACGAGT TCGAGGCAAG GCTAACACAG
GCTTATCAGG CGAACTCTTC AGAGGCTCAG CAGCTGATGG AAGATATCGG CAATGAGATG
GATCTGTTTA CCCTGGCCGA GGAGTTGCCG CAGACCGAAG ATCTGCTTGA AGGCGATGAC
GATGCGCCGA TCATTAAATT GATCAACGCC CTGTTATCGG AAGCGATTAA GGAAGAGGCG
TCCGATATTC ATATCGAGAC CTACGAGAAA CAGCTTGTTG TGCGTTTCCG GGTCGATGGT
GTACTCAAAG AGGTGCTCAA GCCGAACCGT AAACTCTCGT CACTCTTGGT TTCACGTATC
AAGGTGATGG CACGTCTGGA TATCGCCGAG AAACGTGTGC CTCAAGATGG CCGCATCTCG
CTACGTATTG CCGGTCGTGC GGTCGATGTT CGTGTATCGA CGATGCCGTC GAGTCATGGC
GAGCGTGTGG TTTTGCGTCT GCTCGATAAA AATGCGGGTA ACTTAGATCT TATCCAACTG
GGCATGACCG AAGCGGTACG CATTCAGTTC GATGAACTGA TCCGTAAACC TCACGGTATT
ATCCTGGTCA CCGGACCTAC GGGTTCGGGT AAGAGTACGA CCCTCTATGC CGGATTAACC
GAACTCAACA CCAAAGATAC CAATATTCTT ACCGTCGAAG ACCCCATCGA GTATGAGCTT
GAAGGGATCG GTCAGACTCA GGTGAACACT AAGGTCGATA TGACTTTTGC CAGAGGTCTG
CGTGCGATTC TGCGACAAGA TCCCGATGTC GTGATGATTG GTGAGATCCG TGATTTAGAG
ACGGCTCAAA TTGCGGTTCA GGCTTCATTG ACGGGCCATA TGGTACTGTC GACCTTGCAT
ACCAACACAG CCTCAGGTTC GATTACCCGA TTACAGGATA TGGGTGTCGA ACCTTTCCTC
GTCTCATCGA GTTTATTGGG CGTGTTGGCT CAACGATTGA TCCGAACCCT GTGCTCCGAG
TGTAAGTCTG AACACGCACC GGCTCTGAGT GAACGTGCGT TACTGGGCAT GAAAGACGAT
GATACACGAG TGATCTATCG CGCTCAGGGA TGCAAGGCAT GTGGCCATAA TGGCTATCGT
GGACGTACAG GTATTCATGA GTTACTCGTG GTCGATGACG ATGTTCGTGA ACTCATTCAT
ACCGGTCGCG GAGAATTGGC GATTGAGAAA CATATTCGAC AATCGACGCC GAGTATTCGT
CATGATGGTA TGAGTAAGGT ACTTGCTGGG ATCACAACCC TGGAAGAAGT GTTGCGTGTA
ACCCGCGAGG AATAA
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| Protein sequence | MMSETQASHN DELAQVTDEL GLAVESETDE VFHSTSKERL PFAFAHRFEV VLDSVNEPGL
TLFHTASTPV EALLEARRYT GKELPLVQLA PDEFEARLTQ AYQANSSEAQ QLMEDIGNEM
DLFTLAEELP QTEDLLEGDD DAPIIKLINA LLSEAIKEEA SDIHIETYEK QLVVRFRVDG
VLKEVLKPNR KLSSLLVSRI KVMARLDIAE KRVPQDGRIS LRIAGRAVDV RVSTMPSSHG
ERVVLRLLDK NAGNLDLIQL GMTEAVRIQF DELIRKPHGI ILVTGPTGSG KSTTLYAGLT
ELNTKDTNIL TVEDPIEYEL EGIGQTQVNT KVDMTFARGL RAILRQDPDV VMIGEIRDLE
TAQIAVQASL TGHMVLSTLH TNTASGSITR LQDMGVEPFL VSSSLLGVLA QRLIRTLCSE
CKSEHAPALS ERALLGMKDD DTRVIYRAQG CKACGHNGYR GRTGIHELLV VDDDVRELIH
TGRGELAIEK HIRQSTPSIR HDGMSKVLAG ITTLEEVLRV TREE
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