| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4345 |
|---|
| Symbol | |
|---|
| ID | 5613140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5322757 |
|---|
| End bp | 5323569 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640935315 |
|---|
| Product | 3'(2'),5'-bisphosphate nucleotidase |
|---|
| Protein accession | YP_001476075 |
|---|
| Protein GI | 157377475 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1218] 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase |
|---|
| TIGRFAM ID | [TIGR01331] 3'(2'),5'-bisphosphate nucleotidase, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0764752 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.270175 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCAG AAGATTACAT AGAGCAAGTT ATTGATATCG CAGTTAAGGC TGGTTCGGAG
ATTCGAAATA TCTATCTGAA TGGCACATTT GATAAAGAGA TTAAGTCGGA TAATACTCCG
GTCACTTCTG CTGATATCGC AGCACATAAT ATTATTAGTT TGGCGCTTAA GGCATTAACG
CCAGATATTC CGGTTTTGTC CGAGGAGGAT GCCGAAATTC CTTTCTCACA GAGAGAGCAT
TGGAGCCGTT ATTGGCTCGT CGACCCTCTC GATGGTACCG GGGAGTTTAT TGCCGGGAGT
GGGGATTTTT CGGTCATTAT CGCTCTGGTT GAACATAACC GTCCCATCAT GGGAGTGGTT
TATGTCCCTA TGACAGAAGT TTGCTATTAC GCGATTGCCG GGCTCGGTGC CTACAAGCGA
GATGATAAGT CGGAAGTGAG GATCACCAGT CGTCAACTTC CCGATAGTAA TGAACCACCA
TTGAAGCTCG CGGTGAGCCG CCGTCAGGAC CCTCAGTCAG TATTGAAACT CTTTAATCAG
CCAAAACATT GTGAATTAAT TGTTCTCGGT GGCGCAGCCT TGAAGAGCTG TCTTATTGCC
GAAGGTAAAG CCGATTGTTA TGTGCGTATT GGCCCTACGG GTGAGTGGGA TACCGGTGCT
GCACAGATTA TTATCGAGGA AGCTGGCGGT CAGATAATGG ATCTTGAGCT TCAGCCACTG
AGTTATAATG AGCGCGAAAG CCTGGAAAAC CCCAACTTTA TTGTTGTTGG CTCACCTCAC
CTTGCGTGGG ATAGAATTTT ATTAAATGAG TAA
|
|---|
| Protein sequence | MKPEDYIEQV IDIAVKAGSE IRNIYLNGTF DKEIKSDNTP VTSADIAAHN IISLALKALT
PDIPVLSEED AEIPFSQREH WSRYWLVDPL DGTGEFIAGS GDFSVIIALV EHNRPIMGVV
YVPMTEVCYY AIAGLGAYKR DDKSEVRITS RQLPDSNEPP LKLAVSRRQD PQSVLKLFNQ
PKHCELIVLG GAALKSCLIA EGKADCYVRI GPTGEWDTGA AQIIIEEAGG QIMDLELQPL
SYNERESLEN PNFIVVGSPH LAWDRILLNE
|
|---|
| |