| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4337 |
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| Symbol | |
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| ID | 5613664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5314048 |
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| End bp | 5314896 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640935307 |
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| Product | glutamate racemase |
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| Protein accession | YP_001476067 |
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| Protein GI | 157377467 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0796] Glutamate racemase |
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| TIGRFAM ID | [TIGR00067] glutamate racemase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000357145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000147212 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATACTA AGTGGAGAAG AGATTTGTCA GGACCAATAC TTGTTTTTGA TTCAGGAATA
GGTGGCTTAT CTATTTTCGA CGAGATTAGG CAAGTACTAC CTGATAAACA ATATTGCTAC
CTTTTCGATA ATGCCCGCCT GCCATACGGC GAGTTGGACG AGCAGGTATT GATAAGTGGC
TGCAAGGCTC TTATCACTTC TATTGTTAAA ATGATCGATG CGTCCTTAAT TGTGATTGCC
TGTAATACGG CGAGCACCTT AGTTTTACCA GCACTGAGAG AAGTGCTGAA CATTCCGGTT
GTCGGAGTGG TGCCCGCAAT AAAACCCGCT GCAGCATTAT CACGAAATAA GCATATTGGT
GTACTGGCAA CTCCGGGAAC GATAAGACGA CCCTATACTC ACGAATTGAT AGAACAGTTT
GGTGGTGATT GTAAGGTTGA ACTATATGGT TCTTCTGAAC TGGTTATATT GTCGGAGAGA
AAAGCTGCCG GCATCGACAT CATACAAGCG GATATCGCTA AAATATTAAA CCCTATTAAA
TGCAGTGGAC TCGACACACT TGTTTTAGGC TGCACTCACT TCCCTATGCT CAAAGTCGAG
ATACAAGACT ATCTGGGTGA AAATGTATTA TTACTGGATT CTGCCAAGGC GGTGGCGGCA
AGGGTAATAA GCCTATGTTT ACAATTGGAC GAAAAGAACC GTAATCGAAA TAATTCTAAG
GATGAAGTGA GTGGTTCGGA GTCAAAGGAG ATGATAGCGC TGTATACGTC TGAGGAGATA
AGCGATGGGC TTAAAAACAC ATTAGCCAAA ATTGGGTTTT CAAATATTGA AAAGGTCCAA
ACTGGCTAA
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| Protein sequence | MHTKWRRDLS GPILVFDSGI GGLSIFDEIR QVLPDKQYCY LFDNARLPYG ELDEQVLISG
CKALITSIVK MIDASLIVIA CNTASTLVLP ALREVLNIPV VGVVPAIKPA AALSRNKHIG
VLATPGTIRR PYTHELIEQF GGDCKVELYG SSELVILSER KAAGIDIIQA DIAKILNPIK
CSGLDTLVLG CTHFPMLKVE IQDYLGENVL LLDSAKAVAA RVISLCLQLD EKNRNRNNSK
DEVSGSESKE MIALYTSEEI SDGLKNTLAK IGFSNIEKVQ TG
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