| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4326 |
|---|
| Symbol | rplJ |
|---|
| ID | 5609808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5298744 |
|---|
| End bp | 5299244 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640935289 |
|---|
| Product | 50S ribosomal protein L10 |
|---|
| Protein accession | YP_001476058 |
|---|
| Protein GI | 157377458 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0244] Ribosomal protein L10 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000437071 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000000820773 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTAA GACTCGAAGA CAAACAAGCG ATTGTTGCTG AAGTCAACGA AGCTGCCAAA
GGTGCTTTAT CTGCAGTTGT TGCCGATTCA CGCGGTGTAA CTGTAGGTGA AATGACCGGT
CTGCGTAAAG CAGCTCGCGA AGCAGGAGTG TACATCAGAG TTGTACGTAA CACTCTAGTT
AAGCGCGCTG TTGAAGGTAC TGATTTTGAG TGCCTTAACG AGACGTTTAC TGGTCCTACT
TTAATTGCAT TCTCTAACGA GCACCCAGGT GCTGCAGCGC GTCTTCTTAA AGATTTCGCC
GCTGACCAAG AGAAATTTGC AATTAAAGCA GCAGCCTTTG AAGGGGAATT AATCCCTGCA
GCCGATATAG ATCGCTTAGC GAAACTGCCA ACATACGACG AAGCAATAGC TCAGTTGATG
ATGACAATGA AAGAAGCATC TGCTGGCAAG CTGGTACGTA CACTGGCCGC CCTTCGCGAT
CAAAAAGAAG AAGCAGCTTA A
|
|---|
| Protein sequence | MALRLEDKQA IVAEVNEAAK GALSAVVADS RGVTVGEMTG LRKAAREAGV YIRVVRNTLV
KRAVEGTDFE CLNETFTGPT LIAFSNEHPG AAARLLKDFA ADQEKFAIKA AAFEGELIPA
ADIDRLAKLP TYDEAIAQLM MTMKEASAGK LVRTLAALRD QKEEAA
|
|---|
| |