| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4324 |
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| Symbol | rpoB |
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| ID | 5609806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5294059 |
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| End bp | 5298090 |
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| Gene Length | 4032 bp |
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| Protein Length | 1343 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640935287 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001476056 |
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| Protein GI | 157377456 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.397573 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000917955 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA ACGTCCACAA
GTTTTGGATA TTCCTTATCT TTTGTCTATA CAGTTGGACT CATTCAAGAA GTTCACCGAT
CAAGATCCTA CCGGTGAGCG TGGTTTTGAG GCCGCTTTCC GTAGCGTTTT TCCCATCAAA
AGCTTTTCTG GTAACTCAGA GCTACAGTAT GTTAGCTATA AGTTAGGTGA GCCTGTTTTT
GATGTGAAAG AGTGTCAAAT TCGCGGTGTT ACATATTCCG CACCACTGCG CGTTAAATTG
CGTATGGTGT TGTATGACCG TGAAGCGGCA CCTGGCACAG TTAAAGACAT TAAAGAACAA
GAAGTCTACA TGGGTGATAT TCCCATGATG ACTGACAACG GTACCTTTGT TATCAATGGT
ACTGAGCGTG TTATTGTATC TCAGTTACAC CGTTCACCTG GTGTTTTCTT CGATCATGAC
CGCGGCAAGA CCCACTCATC TGGTAAGGTG CTTTATAACG CACGTATTAT TCCTTACCGT
GGTTCTTGGT TAGATTTTGA ATTCGATCCT AAAGATGCTC TGTTTGTTCG TATTGACCGT
CGTCGTAAAC TAGCGGCTTC TATCATTTTA CGTGCATTAG ACTATTCTAC TCAGGATATT
TTGGATCTGT TCTTCGATCG CGTTAATTTT AAGATCAAGA AAGATTCATT AGTGATGGAT
CTAGTTGCAG AGCGCCTACG TGGTGAGACT GCTAGCTACG ATATCAAAGA TTCTGAAGGT
AGCATTCTTG TTGAGAAAGG ACGTCGTATT ACTGCACGTC ATATTCGTCA GCTAGAAAAG
ACTAATACTA CAGAACTTGA AGTACCGGTT GATTACATCT CTGGTAAGAT CTCTGGTCAG
GATTACATCG ATCCGGATAC GGGTGAAGTG TTAGTTTCAG CGAACGCTGA GATAAGCCTT
GAAGATCTAG CTAAATTATC ACTGGCTGGC ATTAAAGAGA TAAGCACACT GTATATCAAC
GAGCTTGATA ACGGTGCTTA CATGTCAGAT ACGCTACGTA TCGATTCTAC GACTAACCGC
TTAGAAGCAT TAGTTGAGAT CTACCGTATG ATGCGTCCTG GTGAGCCACC AACCAAAGAT
GCTGCCGAAG CCCTATTCCA GAACTTGTTC TTCAGTGAAG AGCGTTATGA CCTATCTAAA
GTTGGTCGTA TGAAGTTCAA CCGTCGTTTA AGCATTGATG ACGACGAAGG TACAGGCATC
CTATCTAAGG AAGATATCGT TGCTGTTATG AAAAACATCA TCACTATCCG TAATGGTAAT
GATGAAGTTG ATGATATCGA TCACTTGGGT AACCGTCGTA TCCGTAGTGT TGGTGAAATG
GCTGAAAACC AATTCCGTGT AGGTCTAGTT CGTGTTGAAC GTGCCGTACG TGAGCGTTTA
AGCCTTGGTG ATCTTAACGA GCTAATGCCT CAAGATTTGA TCAACGCTAA GCCAATCTCT
GCAGCAGTTA AGGAGTTCTT CGGATCTTCA CAACTGTCTC AGTTTATGGA TCAAAACAAC
CCACTTTCAG AAGTGACTCA CAAGCGCCGT ATTTCGGCTC TTGGTCCAGG TGGTTTGACT
CGTGAACGTG CTGGTTTCGA AGTTCGAGAT GTACACCCAA CTCACTACGG TCGTTTATGT
CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTAATTA ACTCGTTAGC AAGTTTTGCA
CGTACAAACT CTTACGGCTT CCTTGAAACA CCTTACCGCA AGGTTATTGA TGGTGTTGTG
ACTGATCAGG TCGATTACCT GTCAGCGATC GAAGAAGGTC GTTATGTTAT CGCACAGGCT
ATCGTCGACT TAGATGCTGA CGGTCGCATG ATGGACGAGC TCATCGCTTG TCGTCATAAA
GGTGATTCAA CCTTTATGGG TGCTGGTGAC ATTCAATATA TGGATGTATC GCCGCAGCAG
ATCATTTCAG TTGCAGCGTC ACTGATTCCG TTCCTAGAAC ACGATGATGC TAACCGTGCC
TTGATGGGTG CGAACATGCA ACGTCAAGCC GTACCAACAC TAAAAGCTGA TAAGCCATTA
GTCGGTACAG GTATTGAGCG TACATTGGCA GTAGATTCAG GTGTTGTTGT TGCTGCTAAA
CGTGGCGGTT ATGTCGATTA TGTCGACGCT AGCCGTATCG TTGTTAAGGT TAACGAATCT
GAGCTTACTC CTGGTGAAGC TGGTATCGAC ATCTACAACT TGACTAAATA CACGCGTTCT
AACCAGAACA CCTGTATTAA CCAACGTCCT TGTTGTTCGA TGGGTGATCC GGTTGTTCGT
GGTGACGTTT TAGCCGATGG CCCATCTACC GATTTAGGTG ATTTGGCTCT TGGTCAGAAC
ATGCGTATCG CGTTCATGCC TTGGAATGGT TACAACTTCG AGGATTCAAT CCTTATCTCT
GAGCGTGTAG CTATGGAAGA TCGTTTCACG ACTATCCATA TTCAGGAGCT TTCATGTATC
GCTCGTGATA CTAAGCTAGG TAGTGAAGAG ATCACAGCCG ATATTCCAAA CGTTGGTGAG
TCTGCGCTTT CTAAGCTGGA TGAATCAGGT ATCGTTTACA TCGGTGCTGA AGTTAAGGGT
GGTGACATCC TAGTTGGTAA GGTAACACCT AAGGGTGAAA CTCAACTGAC TCCAGAAGAG
AAACTACTCC GTGCTATTTT CGGTGAGAAG GCCTCTGACG TTAAAGACAG TTCACTTCGC
GTACCTAACT CAGTTAAAGG TACTATCATC GACGTCCAGG TATTTACCCG TGACGGCGTT
GAGAAAGATA AGCGTGCTGT TGAAATTGAA GAGATGCATG TCGGTCAGGC TAAGAAAGAT
TTGAGCGAAG AGTTCCAGAT CCTCGAAGAG GGTGTTTATG GACGTGCCCG TAATCTTCTA
CTGAATGCAG GCTTTACCGA AGATCAGTTA GCGACTATTC CACGCTCACA GTTATTGGTT
CAAACCATCG ACGATGAAGC TAAGCAAACT GAACTTGAAC AACTTGCCGA ACAGCATGAC
GAACTAAAAG CAGATTTCGA TAAGAAGTTT GAAATTAAGC GTCGTAAGAT CACTCAAGGT
GATGATTTAG CACCTGGCGT ACTTAAGATT GTTAAGGTTT ACCTTGCAGT TAAACGTACT
ATCCAGCCTG GTGATAAGAT GGCTGGTCGT CACGGTAACA AGGGTGTTAT CTCTAAGATT
AACCCTGTTG AAGACATGCC TTACGATGAG AACGGTAACC CAATCGACAT CGTTCTGAAC
CCACTAGGTG TACCATCTCG TATGAACATC GGTCAGGTTC TAGAGGTGCA CATGGGTGCT
GCTGCTAAAG GTATCGGTGA TCGCATCACT GCTATGCTGG AAGAGCAACG CGAACTAGCA
GAGCTTCGTG GCTACATCAA AGAAGTATAT GAGTTAGGTG AAGAAGTGCA GCAGCGCGTC
GACATCGATT CGTTTACCGA TGATGAAGTA TTGCGTCTTG CTAAGAACCT TAAGGGTGGT
GTCCCAACTG CTACGCCTGC ATTCGATGGT GCAAAAGAGA AAGAAATTAA GGAAATGCTG
GCACTTGCTG GTCTTCCAAC TTCTGGACAG CGCCGTTTGT TTGATGGTCG TACGGGTGAT
GAGTTTGAGC GTCAGGTAAC TGTAGGTTAC ATGTATATGC TTAAGCTGAA CCACTTGGTT
GACGATAAGA TGCATGCTCG TTCTACGGGT TCATACAGTC TTGTTACTCA GCAACCATTG
GGTGGTAAAG CTCAGTTTGG TGGTCAGCGT TTCGGTGAGA TGGAAGTTTG GGCACTAGAA
GCATACGGTG CCGCATATAC GCTTCAGGAA ATGCTCACTG TTAAATCTGA TGACGTTAAC
GGTCGTACTC ATATGTATAA AAACATTGTC GACGGTAACC ACCAGATGCA ACCAGGTATG
CCAGAGTCCT TCAATGTACT ATTGAAGGAG ATCCGTTCAC TCGGTATTAA TATCGAGTTG
GATCAAGACT AA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFKKFTD QDPTGERGFE AAFRSVFPIK
SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA PGTVKDIKEQ
EVYMGDIPMM TDNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLAASIIL RALDYSTQDI LDLFFDRVNF KIKKDSLVMD
LVAERLRGET ASYDIKDSEG SILVEKGRRI TARHIRQLEK TNTTELEVPV DYISGKISGQ
DYIDPDTGEV LVSANAEISL EDLAKLSLAG IKEISTLYIN ELDNGAYMSD TLRIDSTTNR
LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL SIDDDEGTGI
LSKEDIVAVM KNIITIRNGN DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVIDGVV
TDQVDYLSAI EEGRYVIAQA IVDLDADGRM MDELIACRHK GDSTFMGAGD IQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLKADKPL VGTGIERTLA VDSGVVVAAK
RGGYVDYVDA SRIVVKVNES ELTPGEAGID IYNLTKYTRS NQNTCINQRP CCSMGDPVVR
GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAMEDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAVEIE EMHVGQAKKD
LSEEFQILEE GVYGRARNLL LNAGFTEDQL ATIPRSQLLV QTIDDEAKQT ELEQLAEQHD
ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
NPVEDMPYDE NGNPIDIVLN PLGVPSRMNI GQVLEVHMGA AAKGIGDRIT AMLEEQRELA
ELRGYIKEVY ELGEEVQQRV DIDSFTDDEV LRLAKNLKGG VPTATPAFDG AKEKEIKEML
ALAGLPTSGQ RRLFDGRTGD EFERQVTVGY MYMLKLNHLV DDKMHARSTG SYSLVTQQPL
GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVN GRTHMYKNIV DGNHQMQPGM
PESFNVLLKE IRSLGINIEL DQD
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