Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4322 |
Symbol | rpsL |
ID | 5614128 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5289196 |
End bp | 5289570 |
Gene Length | 375 bp |
Protein Length | 124 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640935285 |
Product | 30S ribosomal protein S12 |
Protein accession | YP_001476054 |
Protein GI | 157377454 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0048] Ribosomal protein S12 |
TIGRFAM ID | [TIGR00981] ribosomal protein S12, bacterial/organelle |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00668981 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000093676 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGGCAACTG TAAACCAGTT GGTACGTAAG CCACGCGCGC CAAAAGTCGA CAAGACTAAT GTGCCTGCGT TGGATGCGTG TCCACAAAAA CGTGGTGTTT GTACTCGCGT ATATACAACC ACACCAAAAA AACCTAACTC TGCACTACGT AAAGTAGCTC GTGTGCGTCT AACTAACGGT TTCGAAGTTA CTTCGTACAT CGGCGGTGAA GGCCACAACC TGCAGGAACA CAGTGTAATC CTAATCCGTG GTGGTCGTGT TAAAGACTTA CCTGGTGTGC GTTACCACAC TGTTCGTGGC GCTTTAGACT GTGCTGGCGT AAGTGAACGT CGTCAAGGTC GTTCTAAGTA CGGAGCTAAG CGTCCTAAGT CTTAA
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Protein sequence | MATVNQLVRK PRAPKVDKTN VPALDACPQK RGVCTRVYTT TPKKPNSALR KVARVRLTNG FEVTSYIGGE GHNLQEHSVI LIRGGRVKDL PGVRYHTVRG ALDCAGVSER RQGRSKYGAK RPKS
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