Gene Ssed_4322 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4322 
SymbolrpsL 
ID5614128 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5289196 
End bp5289570 
Gene Length375 bp 
Protein Length124 aa 
Translation table11 
GC content49% 
IMG OID640935285 
Product30S ribosomal protein S12 
Protein accessionYP_001476054 
Protein GI157377454 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0048] Ribosomal protein S12 
TIGRFAM ID[TIGR00981] ribosomal protein S12, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00668981 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000000093676 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCAACTG TAAACCAGTT GGTACGTAAG CCACGCGCGC CAAAAGTCGA CAAGACTAAT 
GTGCCTGCGT TGGATGCGTG TCCACAAAAA CGTGGTGTTT GTACTCGCGT ATATACAACC
ACACCAAAAA AACCTAACTC TGCACTACGT AAAGTAGCTC GTGTGCGTCT AACTAACGGT
TTCGAAGTTA CTTCGTACAT CGGCGGTGAA GGCCACAACC TGCAGGAACA CAGTGTAATC
CTAATCCGTG GTGGTCGTGT TAAAGACTTA CCTGGTGTGC GTTACCACAC TGTTCGTGGC
GCTTTAGACT GTGCTGGCGT AAGTGAACGT CGTCAAGGTC GTTCTAAGTA CGGAGCTAAG
CGTCCTAAGT CTTAA
 
Protein sequence
MATVNQLVRK PRAPKVDKTN VPALDACPQK RGVCTRVYTT TPKKPNSALR KVARVRLTNG 
FEVTSYIGGE GHNLQEHSVI LIRGGRVKDL PGVRYHTVRG ALDCAGVSER RQGRSKYGAK
RPKS