Gene Ssed_4321 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4321 
Symbol 
ID5614127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5288645 
End bp5289115 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content45% 
IMG OID640935284 
Product30S ribosomal protein S7 
Protein accessionYP_001476053 
Protein GI157377453 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0049] Ribosomal protein S7 
TIGRFAM ID[TIGR01029] ribosomal protein S7, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00151135 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value9.75416e-11 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGCCAAGAC GTCGCGTTGT AGGACAACGT AAAATCCTAC CAGATCCAAA GTTTAATAGT 
GAGTTGTTGG CTAAGTTCAT CAACGTCATT ATGCAGGACG GCAAAAAGTC GACTGCAGAA
AAGATTATCT ACAAGGCACT TGATACCGCT TCTGAAAAGA AAAGCGAAGA TCATTTAGTG
ATCCTTGAAG CAGCACTTGA AAATGTTCGC CCATCGGTCG AGGTTAAATC TCGTCGTGTT
GGTGGTTCTA CTTACCAAGT ACCATGTGAA GTACGTCCAG TACGTCGTAA TGCACTGGGC
ATGCGTTGGT TAGTTGAAGC TGCACGTAAG CGTGGTGAAA AATCTATGGC TCTACGTCTA
GCCGGTGAAT TGCTAGACGC TTCAGATAAC AAAGGTACTG CTGTTAAGAA GCGCGAAGAC
GTGCATCGTA TGGCAGAAGC AAACAAAGCG TTTGCTCATT ACCGCTGGTA A
 
Protein sequence
MPRRRVVGQR KILPDPKFNS ELLAKFINVI MQDGKKSTAE KIIYKALDTA SEKKSEDHLV 
ILEAALENVR PSVEVKSRRV GGSTYQVPCE VRPVRRNALG MRWLVEAARK RGEKSMALRL
AGELLDASDN KGTAVKKRED VHRMAEANKA FAHYRW