Gene Ssed_4318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4318 
SymbolrpsJ 
ID5613807 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5284521 
End bp5284832 
Gene Length312 bp 
Protein Length103 aa 
Translation table11 
GC content45% 
IMG OID640935281 
Product30S ribosomal protein S10 
Protein accessionYP_001476050 
Protein GI157377450 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0051] Ribosomal protein S10 
TIGRFAM ID[TIGR01049] ribosomal protein S10, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000242072 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000000477389 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGCAGAACC AAAGAATCCG TATCCGCTTA AAAGGATTTG ATCATCGTCT GATCGATCAG 
TCTACTGCGG AAATCGTTGA AACTGCTAAG CGTACAGGCG CACAGGTTCG TGGTCCAATT
CCACTACCAA CGCGTAAAGA ACGTTATACC ATTTTGACTT CTCCACACGT TAATAAAGAT
GCGCGTGATC AGTACGAACT TCGTACTCAC AAACGTCTAG TTGACATCGT TGAGCCAACT
GAAAAGACTG TAGATGCGCT TATGCGTCTT GATCTTGCGG CTGGTGTTGA CGTTCAAATT
AGCTTGGGTT AA
 
Protein sequence
MQNQRIRIRL KGFDHRLIDQ STAEIVETAK RTGAQVRGPI PLPTRKERYT ILTSPHVNKD 
ARDQYELRTH KRLVDIVEPT EKTVDALMRL DLAAGVDVQI SLG