Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4314 |
Symbol | rplB |
ID | 5609841 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5282105 |
End bp | 5282932 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640935277 |
Product | 50S ribosomal protein L2 |
Protein accession | YP_001476046 |
Protein GI | 157377446 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0090] Ribosomal protein L2 |
TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000100463 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000749477 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | ATGGCAATTA TTAAGTGTAA GCCAACTTCT GCCGGTCGTC GTCACGTTGT TAAAGTGGTG AATACTGACC TGCATAAGGG TAAACCTTTT GCTGGCCTGT TGGCGAAAAA ATCTAAAAGT GGTGGCCGTA ACAATACTGG CCGTATCACT GTTCGCCACA TAGGTGGTGG ACACAAGCAG CATTACCGTA TTATTGATTT TAAACGAATC AAAGACGGTA TCCCTGCAAA AGTTGAGCGT TTGGAATATG ATCCAAACCG CACAGCAAAC ATCGCACTTG TTTTGTATGC TGATGGTGAG CGTCGTTATA TCCTTGCTGC TAAAGGCATG CAAGCTGGAG ATCCAATCCA GTCTGGTATC GATGCGGAAA TCAAAGTGGG TAACGCTTTG CCATTACGCA ACATCCCAAT AGGTAGTGTT GTACACGCAG TTGAAATGAA GCCTGGTAAA GGTGCTCAGA TCGCTCGTTC AGCAGGTACT TATGTACAAG TTGTAGCTCG TGATGGCGAA TACGCTACTC TACGTCTTCG CTCTGGCGAA ATGCGTAAAG TACCAGTAGA CTGCCGCGCG ACATTGGGTG AAGTTGGTAA TGCCGAGCAT ATGCTACGCC AGTTAGGTAA AGCAGGTGCT AAACGCTGGA GAGGCGTACG CCCAACAGTT CGTGGTGTTG CAATGAACCC AGTAGATCAT CCCCATGGTG GTGGTGAAGG CCGTACTTCG GGTGGCCGTC ATCCTGTATC TCCAACGGGT GTTCCAACTA AGGGTTATAA GACTCGTAGT AACAAACGCA CCGACAAGTA CATTGTACGT CGTCGCAATA AAAAGTAA
|
Protein sequence | MAIIKCKPTS AGRRHVVKVV NTDLHKGKPF AGLLAKKSKS GGRNNTGRIT VRHIGGGHKQ HYRIIDFKRI KDGIPAKVER LEYDPNRTAN IALVLYADGE RRYILAAKGM QAGDPIQSGI DAEIKVGNAL PLRNIPIGSV VHAVEMKPGK GAQIARSAGT YVQVVARDGE YATLRLRSGE MRKVPVDCRA TLGEVGNAEH MLRQLGKAGA KRWRGVRPTV RGVAMNPVDH PHGGGEGRTS GGRHPVSPTG VPTKGYKTRS NKRTDKYIVR RRNKK
|
| |