Gene Ssed_4314 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4314 
SymbolrplB 
ID5609841 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5282105 
End bp5282932 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content47% 
IMG OID640935277 
Product50S ribosomal protein L2 
Protein accessionYP_001476046 
Protein GI157377446 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0090] Ribosomal protein L2 
TIGRFAM ID[TIGR01171] ribosomal protein L2, bacterial/organellar 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000100463 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000000749477 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCAATTA TTAAGTGTAA GCCAACTTCT GCCGGTCGTC GTCACGTTGT TAAAGTGGTG 
AATACTGACC TGCATAAGGG TAAACCTTTT GCTGGCCTGT TGGCGAAAAA ATCTAAAAGT
GGTGGCCGTA ACAATACTGG CCGTATCACT GTTCGCCACA TAGGTGGTGG ACACAAGCAG
CATTACCGTA TTATTGATTT TAAACGAATC AAAGACGGTA TCCCTGCAAA AGTTGAGCGT
TTGGAATATG ATCCAAACCG CACAGCAAAC ATCGCACTTG TTTTGTATGC TGATGGTGAG
CGTCGTTATA TCCTTGCTGC TAAAGGCATG CAAGCTGGAG ATCCAATCCA GTCTGGTATC
GATGCGGAAA TCAAAGTGGG TAACGCTTTG CCATTACGCA ACATCCCAAT AGGTAGTGTT
GTACACGCAG TTGAAATGAA GCCTGGTAAA GGTGCTCAGA TCGCTCGTTC AGCAGGTACT
TATGTACAAG TTGTAGCTCG TGATGGCGAA TACGCTACTC TACGTCTTCG CTCTGGCGAA
ATGCGTAAAG TACCAGTAGA CTGCCGCGCG ACATTGGGTG AAGTTGGTAA TGCCGAGCAT
ATGCTACGCC AGTTAGGTAA AGCAGGTGCT AAACGCTGGA GAGGCGTACG CCCAACAGTT
CGTGGTGTTG CAATGAACCC AGTAGATCAT CCCCATGGTG GTGGTGAAGG CCGTACTTCG
GGTGGCCGTC ATCCTGTATC TCCAACGGGT GTTCCAACTA AGGGTTATAA GACTCGTAGT
AACAAACGCA CCGACAAGTA CATTGTACGT CGTCGCAATA AAAAGTAA
 
Protein sequence
MAIIKCKPTS AGRRHVVKVV NTDLHKGKPF AGLLAKKSKS GGRNNTGRIT VRHIGGGHKQ 
HYRIIDFKRI KDGIPAKVER LEYDPNRTAN IALVLYADGE RRYILAAKGM QAGDPIQSGI
DAEIKVGNAL PLRNIPIGSV VHAVEMKPGK GAQIARSAGT YVQVVARDGE YATLRLRSGE
MRKVPVDCRA TLGEVGNAEH MLRQLGKAGA KRWRGVRPTV RGVAMNPVDH PHGGGEGRTS
GGRHPVSPTG VPTKGYKTRS NKRTDKYIVR RRNKK