| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4298 |
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| Symbol | secY |
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| ID | 5612773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5274357 |
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| End bp | 5275697 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640935261 |
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| Product | preprotein translocase subunit SecY |
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| Protein accession | YP_001476030 |
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| Protein GI | 157377430 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000258427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000837901 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGCAAAAC CAGGACTTGA TTTAAAAAGC GCGAAAGGTG GATTTTCTGA ACTGAAGACT
CGCCTCCTGT TCGTGATTGG TGCGATTATC GTCTTTAGAG CCGGTTCGTT TGTACCAATT
CCTGGTATTG ACGCTGCTGT ATTAGCAGAG CTGTTCAATC AGCAGAAGGG TACTATCTTA
GGCATGTTTA ACATGTTCTC TGGTGGTGCC CTTGAACGTG CTTCTATCTT TGCATTGGGA
ATCATGCCGT ATATTTCGGC GTCGATTATC ATGCAGTTGT TGACTGTCGT GCATCCTGCA
CTCGCTGAAC TTAAAAAGGA AGGCGAATCA GGTCGTAAGA AGATCAGTCA ATATACAAGG
TACGGCACAT TGGTCCTGGG TACATTCCAG GCAATCGGTA TCGCAACGGG TCTGCCAAAC
CTAGTTCCAG GTTTAGTTGT AAACCTTGGA TTTGGTTTCT ATTTCGTTGC AGTTGTGAGT
TTAGTGACAG GAACGATGTT CCTTATGTGG CTAGGTGAAC AAATTACCGA ACGAGGCATT
GGTAATGGTA TCTCGATATT AATTTTCGCA GGTATTGTTG CTGGTCTACC ATCTGCTATC
GGCCAAACGG CTGAGCAGGC GCGTCAAGGT GACTTGAACG TACTCGTATT ATTGTTGATT
GCAGTTATTG TATTTGCCGT AACTTATTTC GTTGTATTTG TGGAGCGTGG ACAGCGTCGT
ATCGTCGTTA ACTATGCAAA GCGTCAGCAG GGCCGTAAGG TGTTTGCAGC GCAAAGTACA
CATTTACCAC TTAAGATAAA TATGGCAGGT GTGATACCAC CAATTTTTGC GTCGAGCATT
ATTTTGTTTC CAGGCACACT GGCTCAGTGG TTTGGTCAAA ATGAGTCCCT TTCATGGTTA
AGTGATTTTT CACTTGCTGT GTCACCAGGA CAACCGCTCT ACTCATTATT GTATGCATCA
GCAATCATCT TCTTCTGTTT CTTCTATACT GCGTTGGTGT TTAACCCGCG TGAAACAGCT
GATAATTTGA AGAAGAGTGG TGCGTTTATT CCTGGGATCC GTCCTGGAGA ACAGACTTCG
CGTTACATTG ATAAGGTTAT GACTCGCTTG ACATTAGCAG GCGCACTGTA CATTACCTTT
ATCTGTTTAA TTCCGGAGTT CATGTTAATT ACGTGGAAAG TACAGTTCTA TTTTGGCGGT
ACTTCACTAC TTATTATGGT AGTCGTAATC ATGGACTTCA TGGCTCAAGT TCAGACCCAT
ATGATGTCTC ATCAGTATGA GTCTGTAATG AAGAAAGCTA ACCTGGTGAA TAAAGCGAAT
TTAGATCGCT TTGGTCGCTA A
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| Protein sequence | MAKPGLDLKS AKGGFSELKT RLLFVIGAII VFRAGSFVPI PGIDAAVLAE LFNQQKGTIL
GMFNMFSGGA LERASIFALG IMPYISASII MQLLTVVHPA LAELKKEGES GRKKISQYTR
YGTLVLGTFQ AIGIATGLPN LVPGLVVNLG FGFYFVAVVS LVTGTMFLMW LGEQITERGI
GNGISILIFA GIVAGLPSAI GQTAEQARQG DLNVLVLLLI AVIVFAVTYF VVFVERGQRR
IVVNYAKRQQ GRKVFAAQST HLPLKINMAG VIPPIFASSI ILFPGTLAQW FGQNESLSWL
SDFSLAVSPG QPLYSLLYAS AIIFFCFFYT ALVFNPRETA DNLKKSGAFI PGIRPGEQTS
RYIDKVMTRL TLAGALYITF ICLIPEFMLI TWKVQFYFGG TSLLIMVVVI MDFMAQVQTH
MMSHQYESVM KKANLVNKAN LDRFGR
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