| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4295 |
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| Symbol | rpsD |
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| ID | 5613995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5272686 |
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| End bp | 5273306 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640935258 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001476027 |
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| Protein GI | 157377427 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000502229 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000110473 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCAAGAT ACTTGGGTCC CAAGCTCAAG CTCAGCCGCA GAGAAGGTAC AGACCTTTTC
CTAAAAAGCG GCGTGAGAGC AATCGATTCG AAGTGTAAGC TTGAAACTGC ACCTGGACAA
CACGGCGCTC GTAAGACCCG TCTGTCTGAG TATGGTGTTC AGCTACGTGA GAAACAAAAA
GTTCGTCGTA CTTATGGTGT GCTTGAAAAG CAATTCCGTA ACTACTACAA AGACGCTGCA
CGTACAAAAG GTAACACTGG TGAAAACCTA CTTACTCTTT TAGAAACCCG TCTTGATAAC
GTTGTATACC GTATGGGCTT TGGCGCAACT CGTGCAGAAG CACGTCAGCT TGTAAGCCAC
AAGTCTATTA TGGTAAATGG CAGCGTTGTT AACATTCCAT CATTCAAAGT GTCTGCGAAT
GATGTAATTA GCATTCGTGA GAAGTCTAAG AAGCAAGCGC GTATTATTGC TGCTTTAGAA
GTTGCTTCTC AACGCGAAAA GCCAACATGG GTTGAAGTTG ATAACACTAA GATGGAAGGT
GCTTTCAAGC GTCTACCTGA GCGTAGTGAT TTATCTGCGG AAATTAACGA ACAGCTGATC
GTCGAACTTT ACTCTAAGTA A
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| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKTRLSE YGVQLREKQK
VRRTYGVLEK QFRNYYKDAA RTKGNTGENL LTLLETRLDN VVYRMGFGAT RAEARQLVSH
KSIMVNGSVV NIPSFKVSAN DVISIREKSK KQARIIAALE VASQREKPTW VEVDNTKMEG
AFKRLPERSD LSAEINEQLI VELYSK
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