| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4285 |
|---|
| Symbol | |
|---|
| ID | 5612038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 5265249 |
|---|
| End bp | 5266496 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640935248 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001476017 |
|---|
| Protein GI | 157377417 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4235] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000188069 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTC TCTGGATTTT TATTGCGCTT TTTGTGTTAG TCAGCCTAGT GCTGATTTGG
TTTCCTCACT TTCGTCAGCA AAAGATGTTG CAAGCGGAAG AAGCAGGAGT ACGTAGACAA
ACAAACCTCG AACTATTTAA CAATCGTCTA GCTACACTAG AAAAAGAGCT CGAGGATGAA
CTGTTAGATC AAATTGAATT TGATGCTCTT AAGAAAGAGT TAGAGATAAG TTTGCTTCAG
GACATGAAGC AAGGTGTCGA TGAGTCTTTG GTAAATAAAG TGAAGCCTAA AGGGTTATTG
TGGCCGGTGT TGATGTCTAT CGTCATTATC GGAGTATCAG GGTACTTTTA TACCACTCTT
GGTGCATACG CAAAACTAAA TCAACCTCAA CCGGGTGGGC CACATGCTGG AATGACTCAA
GAACAGGTCA TGCAGCAACG TCTCCAGGCT ATGGAAGATC AAGCTAAAGC AGAGCCTGAA
AACAGTCAGT TACTGTTCAG CTTAGGACAT AGCTATATTT CAGCCAGTCG TTACGATGAT
GCGGTAAAAA CCTTCGACAA GGCTATAGTA TTAGTTGGAA CTCATGCCGA GTTACTTGGA
CCTAAAGCAA CGGCTATGTA TTACAAAGCC AACCAGCAGA TGACTCCAGC AGTCCAGGCT
ATTATCGATC AATCTTTGTC TCTCGATCCT GAAGATCCTT CGACACTACT ATTGGTTGGT
ATGGACTCCT TCTTCACTGC CGATTACCAA AAAGCCATCG AGTCTTGGCA GATCATTCTT
GATAGCGAAC GAAAAGATGT CGATCGCAGT GCCATCATCA ACGCCATCGA CAGCGCTAAA
ATGAGAATGG AAGCAGAAAC AGGTGAAATG CCAAATGATG CTGCGCACGC CAACGTAAAA
GATACGGCTA AGACTGTTAA TGTCGAAGTT TCAATCGCAC CTGAATTAGC AGATAAAGTT
AATAGCTCTG ATATGCTATT TATCTTTGCG CGTAGCACTG AGGGCCCTAA GGTTCCATTA
GCTGCCGTCA AGGTGTCGGC TAAAAGCTTA CCGACGACTA TCACCTTAGA TGACACCACC
TCTATGGGTG GGGATGTAAA GCTAAGTGGC GCAAAAAATG TCGAGATTAT TGCGGTACTA
TCTAAACATG GAACAGTTAA GCCACAGGTC GGTGATCTTC AAGGTCACTT GGCAATGGTT
AAAGTGGGTG ACACGACTCA ACTCTTGATC GATACATTAG TGGAATAA
|
|---|
| Protein sequence | MTTLWIFIAL FVLVSLVLIW FPHFRQQKML QAEEAGVRRQ TNLELFNNRL ATLEKELEDE
LLDQIEFDAL KKELEISLLQ DMKQGVDESL VNKVKPKGLL WPVLMSIVII GVSGYFYTTL
GAYAKLNQPQ PGGPHAGMTQ EQVMQQRLQA MEDQAKAEPE NSQLLFSLGH SYISASRYDD
AVKTFDKAIV LVGTHAELLG PKATAMYYKA NQQMTPAVQA IIDQSLSLDP EDPSTLLLVG
MDSFFTADYQ KAIESWQIIL DSERKDVDRS AIINAIDSAK MRMEAETGEM PNDAAHANVK
DTAKTVNVEV SIAPELADKV NSSDMLFIFA RSTEGPKVPL AAVKVSAKSL PTTITLDDTT
SMGGDVKLSG AKNVEIIAVL SKHGTVKPQV GDLQGHLAMV KVGDTTQLLI DTLVE
|
|---|
| |