| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4259 |
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| Symbol | |
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| ID | 5611588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5229898 |
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| End bp | 5230572 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935219 |
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| Product | ribulose-phosphate 3-epimerase |
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| Protein accession | YP_001475991 |
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| Protein GI | 157377391 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
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| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0110433 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGCCCAT TTCTTATTGC TCCTTCTATC TTATCTGCCG ACTTTGCCCG CTTAGGTGAG
GATGTCGATG CTGTCCTCAA TGCTGGTGCC GATGTGGTTC ACTTTGATGT TATGGATAAT
CATTATGTTC CTAACCTGAC TATTGGCCCT ATGGTATGTC AGGCATTGCG TGATTATGGC
ATCACAGCTG ATATCGATGT TCACCTGATG GTAAAGCCCG TTGACCGTAT GATTCCTGAT
TTTGCTAAAG CCGGGGCTAC ATTCATCACA TTCCACCCGG AAGCGTCTGA GCACCTGGAC
AGAAGCTTAC AGCTAATAAA AGAGTCAGGT TGTAAAGCCG GTTTAGTATT TAATCCGGGT
ACTCCACTGC ATTACTTGGA CCATGTCATG GATAAGCTGG ATGTCATCTT GTTGATGTCG
GTTAACCCGG GGTTCGGTGG CCAATCCTTT ATTCCATCGA CACTGGATAA GCTGAGACAA
GTTAGAAAGT TAATCGATGA CAGTGGTTAT GACATTCGCC TCGAGGTAGA TGGCGGTGTT
AAAGTCGATA ATATTGGCGA GATTGCCGCA GCGGGTGCCG ACATGTTTGT GGCCGGTTCT
GCGATCTTTA ATAAGCCTGA CTACAAAGCT GTTATCGATG AGATGCGTGT CGAGTTAGCT
AAAAGCGAGT CATAA
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| Protein sequence | MRPFLIAPSI LSADFARLGE DVDAVLNAGA DVVHFDVMDN HYVPNLTIGP MVCQALRDYG
ITADIDVHLM VKPVDRMIPD FAKAGATFIT FHPEASEHLD RSLQLIKESG CKAGLVFNPG
TPLHYLDHVM DKLDVILLMS VNPGFGGQSF IPSTLDKLRQ VRKLIDDSGY DIRLEVDGGV
KVDNIGEIAA AGADMFVAGS AIFNKPDYKA VIDEMRVELA KSES
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