| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4241 |
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| Symbol | |
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| ID | 5611166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5207332 |
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| End bp | 5210055 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640935200 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_001475973 |
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| Protein GI | 157377373 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000158675 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGTCACCTA TTGATAGTTT CGAGCAGATA GACAGTTCCT GTCAGTACGC ATGGAGTAAT
AAATTTGAGG TGGGGTTACT ACCTCTTATT GATGTGGAAA AGAATGCTGA GCTCAGGAGT
TTGCTCGATC TTGATAATCA AGCATATGGA AAGAACTCAA AACGCTTTAT AAAAGCGATA
AGCAATGAGC CATATGCGAA GTATCAAAGT GAGCTGTTAA GAGCTTACCT TAAACAACCT
GAAGATAACC TTGAGCTGGA TTGTGACCGT TTGGTTTTGA CTATTAAATG TCAATCTTCT
GATATCGAAA ATATTAAAGC TAACATGCTT AAGTTTTCTT TTAAGGCATT GGATGAGTTG
CTGACTATAA AGAAGATCTC CGTTGGTGCC GTTAATCGAA CTTCTAATAA AGAAGGCCGG
AAGAGTAGGA AAGGACTTAA TCGCCCGGAA TATAACTCTG CTTATAGGGC TACGGTTAAT
GCTGACTCAC GTCGATTCTT TCAGTTATAC ATAGCTGATG GCGTGAAACA CCCAAAAAAG
TTGATGGGGT TGAGAATCGA CTTTATTCCT AATAGGTTTA GTGACTTTGA ACTGAGAGCT
ATATTTGGGC ATTTGAAGTC TGTTTTAACA AATCGCAGAT ACGACCAGTT GATTAACGGG
GCTAAAGTTA CCAGAGTCGA TGTTGGTTTT AATATGCCGG GTGTGATGTC TTCGTTTATT
TATCCTTACC TAACTAAGAA GAGAGCCCGT GACAGTAGCT GTATGCCTAA TGCTTCATCA
ACCGATTTAG TTGAAACTAC ATACATAGGC AATAGATTCA GTTCCTCTCA TTTTATCGTA
TACGAGAAGT TGCTTAAGGA AATGAAAGCT GACTTAAATA TCGGCTTTTC TATTGACCAG
CTTAAGCAGC GTATTGAAGG TCTAGCTGTT ACCACTAGGG TTGAGCGTCG ACAGTACCCC
TATAGATCAA GCCGTAAAGG GCAAATGTTA TTAAAGTTGC CACAAATAAA GTTGCCGCTA
ACAGATCTAG CATTCATTGA CCCATTAGTT TTGGCTCATT CAGAAGAAAA AGTCCTTCGT
AAGTTATTGC GTAATAAAAC AATAAAATCA ATTAAGTCAG GCAAAAAGGG TATAGGTCGC
AGCCTGAAGG GAACCGTGAT AAAAAAACGA GCGTTTAAGC TTAAGGAGGA GTGGTTCATT
CAGGCCAATG TGAAATTGTT GAAGCACTAT CAGAATATTA TCATTAATGC AGATAAGCCA
AACTCTACAG CCGTTAAGTT ATATTGTGCC GAAGGCCGTC ACCTAAACAA ATTTGAGCTT
GAACCATCAG TAACCATGCT TGAAGATTCA GCAGTTGCTC AAGCTGAACA GATGAAGGCT
GTAGAGGCTG AGGCTAGGGT ATTAGCCGTT ATTGCTGGTG CGGGGTCAGG GAAGACAAGA
ACCATAGTTG AGAGAGTCAA GTACCTGTTA GGAGAGGGGA GGCATCCTAG TCGTATTAAA
GTGCTCGCCT ATACCAATGA TGCCGCTAGT GAAATAAGTA GGCGTATAGG CTCTGATGAA
GAGTTATATG TCGGCACCTT TAGCGCTTGG TGTAAGTCAC TATTAGAATT GTTTAATCCC
AGCCGCTTTG AAGGCGCGAA AGTTGTGACT GGTGTGAGAC AAAAGGAAAT GTTTGAACAA
GTAATAATTA GCTCAGGTCT AAAAGAAAAG CTTACTAGCA ACCAACTTAG TGCGCTCATA
AGTGCTAACG CTAATAGACT TATGTCATTT GAAAAACTAC TTGAAGAGCC TGAGCTTGAT
TCAGATTGTA CTTTGGGTGA GCTTGAGAAG TGCTATGAGT TATATTGCAA AGAGAAAAGA
AAGCAAAGGC TTATTGATTT TGACGATATG CTTAAGCTTG TTCATGAAAA GCTAGAAATA
GATCCGTGTT TCCTTAAGAA TGTGGTTGAT GATAGTAAAT ATCTGATCTT AGATGAAATG
CAGGATTCTA ATGCTAGTCA GTGGGCTATT ATGCAGGTGT TGGTGGCTAA TGGATGTCAC
TTATTTTGTG TTGGGGATCC TGCGCAGTCT ATATACGGGT TTAGAGGTGC AGAGCCTACT
CACCTTGATA CTTTTTGCCA GATGATACCG AATGGAGTAA AGGTTTTCCT ATCTCATTCC
TATCGACTCA CACCTGCAAT TTTAAATCTA ACAAACTTGG TTCGCCAGCA AATACATTCA
GATTATCCCG CACTCCAACC TATAAGAAAT GGTGGAAGCA TCCCTTTGAT TAAAGAGTTG
TCATGCTTGG ATGGTGTTAA AGAGTGGTTA GTTAAAGATA TTCAACAGAA GCTTGATAGT
GGCTGTGGGG TTATGGATAT AAAGGTGTTG GTGAGAACAA ACACTGTTGG CGACATACTT
AGGAGTTATC TAGCAAAGCA ATTAAAGCTG AAGCCCACAA TAAAGTTGGG ACGTAAGCAA
TTAGAAAGCC TTGTTATGAC AATGCATAAG TCAAAGGGAA CAGAGTGTAA GATCAGCTAT
GTCATAGATC CAAGATTTTG GAATTCAAAG CAGGATGAAA GGCTTGATCA TTTACGTTTG
ATGTATGTTG CATTGACCAG GGCAAGTCAT GAGCTAATCA TTTGCAAGTC ACTAGAAGGT
AAGGTTATTT ATAGTGATGC AACTAAAGAG GCATATCTGC TCGATATCTT AAGCGAGCGC
CATGACCTGT TTGAGTGTGC TTAG
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| Protein sequence | MSPIDSFEQI DSSCQYAWSN KFEVGLLPLI DVEKNAELRS LLDLDNQAYG KNSKRFIKAI
SNEPYAKYQS ELLRAYLKQP EDNLELDCDR LVLTIKCQSS DIENIKANML KFSFKALDEL
LTIKKISVGA VNRTSNKEGR KSRKGLNRPE YNSAYRATVN ADSRRFFQLY IADGVKHPKK
LMGLRIDFIP NRFSDFELRA IFGHLKSVLT NRRYDQLING AKVTRVDVGF NMPGVMSSFI
YPYLTKKRAR DSSCMPNASS TDLVETTYIG NRFSSSHFIV YEKLLKEMKA DLNIGFSIDQ
LKQRIEGLAV TTRVERRQYP YRSSRKGQML LKLPQIKLPL TDLAFIDPLV LAHSEEKVLR
KLLRNKTIKS IKSGKKGIGR SLKGTVIKKR AFKLKEEWFI QANVKLLKHY QNIIINADKP
NSTAVKLYCA EGRHLNKFEL EPSVTMLEDS AVAQAEQMKA VEAEARVLAV IAGAGSGKTR
TIVERVKYLL GEGRHPSRIK VLAYTNDAAS EISRRIGSDE ELYVGTFSAW CKSLLELFNP
SRFEGAKVVT GVRQKEMFEQ VIISSGLKEK LTSNQLSALI SANANRLMSF EKLLEEPELD
SDCTLGELEK CYELYCKEKR KQRLIDFDDM LKLVHEKLEI DPCFLKNVVD DSKYLILDEM
QDSNASQWAI MQVLVANGCH LFCVGDPAQS IYGFRGAEPT HLDTFCQMIP NGVKVFLSHS
YRLTPAILNL TNLVRQQIHS DYPALQPIRN GGSIPLIKEL SCLDGVKEWL VKDIQQKLDS
GCGVMDIKVL VRTNTVGDIL RSYLAKQLKL KPTIKLGRKQ LESLVMTMHK SKGTECKISY
VIDPRFWNSK QDERLDHLRL MYVALTRASH ELIICKSLEG KVIYSDATKE AYLLDILSER
HDLFECA
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