| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4227 |
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| Symbol | |
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| ID | 5611436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5192113 |
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| End bp | 5193243 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935186 |
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| Product | alcohol dehydrogenase |
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| Protein accession | YP_001475959 |
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| Protein GI | 157377359 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1062] Zn-dependent alcohol dehydrogenases, class III |
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| TIGRFAM ID | [TIGR02818] S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00409479 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAGCAC AGACAATCAA ATCCAAAGCC GCAGTAGCCT GGGCTGTAGG TGAGCCACTA
TCTATGGAAA TCGTAGATGT TATGCCACCA CAGAAAGGTG AAGTACGCGT CAAGATGATC
GCCACCGGCG TTTGCCATAC CGATGCTTTT ACCCTTTCTG GCGATGATCC AGAAGGTATC
TTCCCTTGTA TCCTTGGCCA TGAAGGCGGC GGTATCGTCG AGTCTATTGG TGAAGGTGTG
ACTAGCGTTC AAGTGGGTGA CCATGTGATC CCGCTTTACA CGCCTGAGTG TGGCGAGTGT
AAGTTCTGTA AGTCTGGCAA GACTAACCTT TGTCAGAAAA TCCGTGAAAC TCAAGGTAAA
GGTTTGATGC CAGACGGTAC GACCCGTTTC TCTAAAGATG GCGTCGATAT TTTCCATTAT
ATGGGCACGT CGACCTTCTC TGAGTACACG GTACTGCCTG AGATCTCATT GGCTAAAGTT
AACCCGGAAG CGCCATTGGA AGAGGTTTGT CTGCTCGGTT GCGGTGTGAC TACCGGTATG
GGCGCGGTAA TGAATACGGC TAAAGTTGAA GAGGGCGCCA CGGTTGCTAT CTTCGGTATG
GGCGGTATTG GTCTATCGGC AGTTATCGGT GCGACTATGG CCAAAGCGTC TCGCATCATA
GTTATCGATA TTAACGAAAG TAAATTTGAG TTAGCCCGTA AGTTAGGTGC TACCGATTTT
ATTAACCCGA AAGACTACGA TAAGCCAATT CAAGACGTGA TTGTCGAGTT GACCGATGGC
GGTGTTGATT ACTCATTCGA GTGCATCGGT AACGTTAACG TGATGCGCTC GGCACTCGAA
TGTTGTCATA AAGGTTGGGG TGAGTCTGTG GTTATCGGTG TAGCCGGTGC AGGACAAGAG
ATCTCGACTC GTCCATTCCA GTTAGTCACG GGTCGTGTAT GGAAAGGCTC GGCATTCGGT
GGTGTTAAAG GCCGTTCTGA ACTACCTGAA TATGTTGAGC GTTACATGGC GGGTGAGTTT
AAATTGAATG ACTTCATCAC TCACACCATG GGCCTTGAGC AGGTCAATGA TGCATTTGAT
CTTATGCACG AAGGTAAGAG TATCCGTACT GTTATTCACT TCGATAAGTA A
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| Protein sequence | MTAQTIKSKA AVAWAVGEPL SMEIVDVMPP QKGEVRVKMI ATGVCHTDAF TLSGDDPEGI
FPCILGHEGG GIVESIGEGV TSVQVGDHVI PLYTPECGEC KFCKSGKTNL CQKIRETQGK
GLMPDGTTRF SKDGVDIFHY MGTSTFSEYT VLPEISLAKV NPEAPLEEVC LLGCGVTTGM
GAVMNTAKVE EGATVAIFGM GGIGLSAVIG ATMAKASRII VIDINESKFE LARKLGATDF
INPKDYDKPI QDVIVELTDG GVDYSFECIG NVNVMRSALE CCHKGWGESV VIGVAGAGQE
ISTRPFQLVT GRVWKGSAFG GVKGRSELPE YVERYMAGEF KLNDFITHTM GLEQVNDAFD
LMHEGKSIRT VIHFDK
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