| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4190 |
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| Symbol | |
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| ID | 5612159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5149652 |
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| End bp | 5151145 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640935149 |
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| Product | Na+/H+ antiporter NhaC |
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| Protein accession | YP_001475922 |
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| Protein GI | 157377322 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1757] Na+/H+ antiporter |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0239157 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.371674 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACGA GTGTTGCCGT ACTCCTACCC TTGGCCCTGA CCCTCATTCT AGCCCTGACA
CTTAGGCGAA CTCTTCTGGC TTTAGGCGTA GGAATTCTCT CTGGGGCCCT TATGATTGCC
TCGTTTAATC CCTTCATGAC GCTGGAATAT TTAGCCGTGA CGGCAGGTCA GCAGGTCTAT
GCCGATGGCA GTTGGCAATC CTGGCACTTG AATGTATTAA TGGCGATGGT GCTGCTTGGT
GCTATGACTC AACTGCTGGC GCGAGGCGGA GCCGTCAATG CGTTTGCCGA TTGGCTGTAT
CACCGTATTC GAAACGGCAG GCAGGCGAGG TTGGGGGTCG TTTTCTTAGG CTGGGTGGTA
TTTATCGACG GGATCTTTAG CTGTATTGCC GTGGGTCATG TATGCCAGCC ACTGAGTCAA
CGTTACGCTA TGCCCAAAGA GCAGATTGCC TATTTAGTTG ACTCCAATGC CTCCCCTTTA
TGTTCATTGC TGCCTTTCTC TAGTTGGGGG CCTTATGTGA TGGCGATACT GGCAGGGATC
ACCTTATTGC CTGTCTCTCC ATTACAGGCA TTTATTGAGA TGGCTCAAAT TAACTTTTAT
GCGATTACTG TCATCGGTTT GTCATTGCTG GCCGCTTGGT TTGGTAGCGG TTTTAAGTCA
CTTAAGAATA CTGATACGGC CCCGGAGTCT GTGCAGGTAG GCAGCCCCTG GTTACTAGGT
GTCCCTATGG CAACACTGCT CATCGCTTCG ATTGGATTCA CACTATGGTC GGGAGGCGCG
GCGTCCGAAC ATTGGAGCAT CACCGATTGG TTTTCGAATG CCGATATCGG TAGTTCGATG
CGAAATGCCT GTATATTGGC AACCTTGACC TGTGTCCTAT TGCTTAAATT ATCCGGGCGA
AGTTTAAGCC AGCTGATGAA AGATATATTG GCAGGTATTC AGGGCATTAG TTTTGCTATC
GGTATTCTAA TCTTTACCTG GATGATCGGT GCCGTTATTA AGGATTTAGG TGTCGCTAAG
TTATTGGCTG GCTGGGCCGA GCAGTTTCTC TCTGTGCACT TTCTTCTTGC CGGCACTTTC
TTATTGTGTG CCGTGATGGC GTTTACGACA GGCTCCAGCT GGGGGACATT TGCGATAATG
ATCCCCATAG GTAGCGAGAT CGCCTCTGCA GTCGATGTGA CTATGTTGAT TCCAGCGCTC
AGCGCCGTTA TGGCGGGAGC CGTTTTTGGC GATCACTGCT CCCCCATCTC AGATACCAGC
GTGTTGAGCG CAACCAGCAG CGGTTGTGAG CCTCACTCTC ATGTTATCAC TCAACTTCCT
TTTGCAATGA TCGCAGCTTT CACGTCCCTC TTGGGTTATC AATTAACGAA TCTGGCTCTG
CCTGGCTATG TCGTTTGGCT CATCGTTGGA ATGACAGCCG TTGGGCTTTT CTTGTTATTG
ACTCGGTTCA GTGGGAAATT TTCTCGAAGA GAGGCTTTAC AGGAAGAGGG CTGA
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| Protein sequence | MTTSVAVLLP LALTLILALT LRRTLLALGV GILSGALMIA SFNPFMTLEY LAVTAGQQVY
ADGSWQSWHL NVLMAMVLLG AMTQLLARGG AVNAFADWLY HRIRNGRQAR LGVVFLGWVV
FIDGIFSCIA VGHVCQPLSQ RYAMPKEQIA YLVDSNASPL CSLLPFSSWG PYVMAILAGI
TLLPVSPLQA FIEMAQINFY AITVIGLSLL AAWFGSGFKS LKNTDTAPES VQVGSPWLLG
VPMATLLIAS IGFTLWSGGA ASEHWSITDW FSNADIGSSM RNACILATLT CVLLLKLSGR
SLSQLMKDIL AGIQGISFAI GILIFTWMIG AVIKDLGVAK LLAGWAEQFL SVHFLLAGTF
LLCAVMAFTT GSSWGTFAIM IPIGSEIASA VDVTMLIPAL SAVMAGAVFG DHCSPISDTS
VLSATSSGCE PHSHVITQLP FAMIAAFTSL LGYQLTNLAL PGYVVWLIVG MTAVGLFLLL
TRFSGKFSRR EALQEEG
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