| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4184 |
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| Symbol | |
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| ID | 5612165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5143202 |
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| End bp | 5144713 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640935143 |
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| Product | flavocytochrome c |
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| Protein accession | YP_001475916 |
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| Protein GI | 157377316 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0029] Aspartate oxidase |
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| TIGRFAM ID | [TIGR01813] flavocytochrome c |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.159689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGATA GAAGAAATTT TTTGAAATTG GGTGCAGGTG CGGCGCTGGG CGGGCTGGCA
TCGACTATGC CTGGTACTGT TATGGCCAGT GAGTGTGGCG AGATAAAGTG GAACGAATCG
GCCGATGTGA TTGTTGTCGG CTCTGGTTTT GCGGGCCTTT CTGCGGCGTT GAATGTTAAG
CGTAGTGGTG TCGGCTCTGT ACTGGTTCTT GAAAAGATGC AGGTCTTCGG TGGTAACTCT
GCCATCAATG GCGGCTGGTT AGCCATTCCT AAAAACCCTA CCCAATTAGC CCAGGGAGTT
AACGATGACT CGCCGGAAGA GCTGGTTAAA GATCAGATCA TCTCCGGACG CGGCATGCAA
AATGAAGACA TGCTTCGTCA GATAGCGAAT CGTGCACTTG ATGCCTATGA CCTGTGTATC
GAAACAGGCG TTAAATTCCG CAAGGACTTT AACATTCAGG TCGGTGGCCA TAACAAGGCG
CGTGCTATCC GTACCCAACA CGGTACCGGT GGTGACATCA CCACTAAGCT CTATGAAGCC
GGTGTGAAAG AGGGGATCGA TTATCGCCTC CAGCATTACA TCGAAGACTT CATCATGGAT
GGACAGGAGA TCATCGGCCT TAAGGTACGT CAAAACTACC GCTTCCCGGA TCTAAAAACC
GGTAAGAGCA TCTATATCAA GGCTAACAGG GCAGTTGTCC TCGCCAATGG CGGCTTTGCC
CGCAATATGG AGCTGCGCGC CGCAGTCGAC CCATCTCTGG ATCCGACGCT CGATGGTACC
AATGCCTTAG GCGCTACAGG TGAAGTAACC CTGACCGCTA TGGCACATGG CGCACTGCCG
GTACATATGA ACCTGATTCA AACCGGACAT TGGGGCTCAC CCGATGAAGG CGGCTTCGGT
TGGTCAAATG CCCTGCTCTC TATCGGCTGG CACGAAGGGG TCTCAGTCAG TGTACTGAAT
GGTAAGCGCT ACATGAACGA GAGAGCCGAT CGTAAGACCT GCTCGGAAGC CATCATGAAG
AACCGTTATC AGGACGGCTC ACCGGCTTAC CCGGTCGTCT TCTTTAACCA CAAAGATCAT
CCGGATGATG ACCGTGTCGT TCGCGCGCTC CGTGATGATA TGGCGTGGAA GGTCGACAGC
TTCGAGCAGC TGGCAGAGAA ATTCAATATT CCTCTGACCC AGTTAAAGCA GACGGTGAAA
GAGTTTAATG CACAAGTCAG CACACGTCAG GACCCTCTCT TCGGCCGTAA GATGGATACC
GCTGTCGAGC TAAAACCGCC ATTCGTGGTT TCACGCATCT GGCCTAAGGT GCACTACTGC
ATGGGCGGCT TAAAAACAGA TATCGGTGCC CGGGTAATTG ATGGTCGCTC CATGAAGCCT
ATCAAGAAAC TCTATGCCGT CGGTGAAGTG ACAGGTGGAG TCCACGGCGA GGCGCGACTG
AGTTCTACTT CGTGTCTGGA ATGTCTGACG ATGGGTATCG TCGTCTCTGA AACTATTAAA
AGCGACGTGT AG
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| Protein sequence | MQDRRNFLKL GAGAALGGLA STMPGTVMAS ECGEIKWNES ADVIVVGSGF AGLSAALNVK
RSGVGSVLVL EKMQVFGGNS AINGGWLAIP KNPTQLAQGV NDDSPEELVK DQIISGRGMQ
NEDMLRQIAN RALDAYDLCI ETGVKFRKDF NIQVGGHNKA RAIRTQHGTG GDITTKLYEA
GVKEGIDYRL QHYIEDFIMD GQEIIGLKVR QNYRFPDLKT GKSIYIKANR AVVLANGGFA
RNMELRAAVD PSLDPTLDGT NALGATGEVT LTAMAHGALP VHMNLIQTGH WGSPDEGGFG
WSNALLSIGW HEGVSVSVLN GKRYMNERAD RKTCSEAIMK NRYQDGSPAY PVVFFNHKDH
PDDDRVVRAL RDDMAWKVDS FEQLAEKFNI PLTQLKQTVK EFNAQVSTRQ DPLFGRKMDT
AVELKPPFVV SRIWPKVHYC MGGLKTDIGA RVIDGRSMKP IKKLYAVGEV TGGVHGEARL
SSTSCLECLT MGIVVSETIK SDV
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