| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4178 |
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| Symbol | |
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| ID | 5612324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5137436 |
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| End bp | 5138938 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935137 |
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| Product | flavocytochrome c flavin subunit |
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| Protein accession | YP_001475910 |
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| Protein GI | 157377310 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01813] flavocytochrome c |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.630459 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACAA GACGTTCATT TTTAAAATTT GGTGCGGGAG CAGCTGCCGT TGGCGCACTG
GCTCCTCTCA CCGTCAGCGC GAATTCATCT GACGTCAAAT GGGATGAAGA ACACGAAATC
ATCATCGTAG GTTCCGGTTT TGCCGGACTC GCAGCCGCCG TCGAAGCGGG TAAATTAGGC
GCTAAAGATA TCGTCATATT CGAGAAGCTC GGCGTCTATG GCGGCAACAG TACGCTCAAC
GCCGGACAGG CCTGTTTCGC TAATACCGAT CTGCAGAAGC AACTTGGCAT CGAAGACAGC
GCAGAGCTCA TGGTGCAAGA CCAGCTTAAA TCTGGCCGTG GTTATGCCAG TGAAGAGCTG
TTGAGACACA GCGCAGAGCT TGGTCCATAT ATCTATCAAC TCACCAAAGA CTGTGGCTGT
ATCTATCGCG ACCATATCAT CAACACAGGC GGCACCAGCG CAACCCGTAG CCATCAGGTC
ATCGAACGCA GCGGTGCAGG CTTTATCCGT CCTATGCTTA AAACCGCACG CGGCTATGGT
GTAAAAACCA AGATCCGCCA TAAGTTTGAG CATCTGATCA CTGCAAAAGA TGGCACGGTA
TTGGGTATTC AGGTTCGTAA AGGATATCAC TTCGGCCACG AAGACTCAGG CAAGCTTATT
AATGTTCGCG CCGAGAAGGG TGTCTTGATT GCCACCGGCG GCTTCGGTGC CAACGTGAGT
TTCCGTCAGG CATTGGATCC AAACCTGGGC TCCGAGGTTG GCTGTACTAA CGCTCGTGGC
GCTACGGGTG ATGGCCTAAT TGCCATGATA GCCGAAGGCG CTATGCCGGT TCACCTGAGC
TTCATTCAAT CGGGTCCTTG GGCATCACCT GATGAGGGCG GATTCGGATA CGGCGCAGGT
TTCTCACTCT ATAACTTCCC ACATTCTGTC GCGATCGATC GCAACACAGG CCAACGTTTC
ATGAATGAAA CGGCTGACCG TAAAACCCGT GCAGATCTGG AAGTCCAACG CCGTGATAAA
GATGGCAAGC CTAACCCGGC ACTGCTTATC ACACCTAAAC ATGAAGCGAA GAAAGATCCT
TCGATGGCTA ACGTGCTGAA ATATAACGTC GCCTGGGAAT TCGACAGCGT CGAAGCGATT
GCCAAGCATT TCGATGTGCC AGTTAAACCA CTGAAGAAGC AGATCGAGGA CTGGAACACA
TACGTCAAGG CCGGAGAAGA TCTTCAGTTT GGCAAGCGTA TGAACATGAG CACGGGAATC
TACCTGACGG CACCTTTCAT CGTTCAACGT CTATGGCCAA AAGTGCACTA CTGTCAGGGC
GGCATTCAGA TTAATGCCAA GGCAGAAGTT ATTGCAGCAA AAACCGGTGA AAAAATTCCA
GGCTTATACG CAGCAGGTGA AGTGTCTGGT GGAGTCCATG GCGTCAGCCG CTTAGGTGGT
TGTTCTACCC CTGAATGCAT GGCATTTGGT GTCACCGCCG CTCGCTCAAT AATGAAAGCA
TAA
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| Protein sequence | MQTRRSFLKF GAGAAAVGAL APLTVSANSS DVKWDEEHEI IIVGSGFAGL AAAVEAGKLG
AKDIVIFEKL GVYGGNSTLN AGQACFANTD LQKQLGIEDS AELMVQDQLK SGRGYASEEL
LRHSAELGPY IYQLTKDCGC IYRDHIINTG GTSATRSHQV IERSGAGFIR PMLKTARGYG
VKTKIRHKFE HLITAKDGTV LGIQVRKGYH FGHEDSGKLI NVRAEKGVLI ATGGFGANVS
FRQALDPNLG SEVGCTNARG ATGDGLIAMI AEGAMPVHLS FIQSGPWASP DEGGFGYGAG
FSLYNFPHSV AIDRNTGQRF MNETADRKTR ADLEVQRRDK DGKPNPALLI TPKHEAKKDP
SMANVLKYNV AWEFDSVEAI AKHFDVPVKP LKKQIEDWNT YVKAGEDLQF GKRMNMSTGI
YLTAPFIVQR LWPKVHYCQG GIQINAKAEV IAAKTGEKIP GLYAAGEVSG GVHGVSRLGG
CSTPECMAFG VTAARSIMKA
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