Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4175 |
Symbol | |
ID | 5612293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5134347 |
End bp | 5135072 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640935134 |
Product | GntR family transcriptional regulator |
Protein accession | YP_001475907 |
Protein GI | 157377307 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACACG ATTTGATCAT GGAACTTAAT ACATCTGTGG CGACAGACAC CAGAGCAGAG TCAATAACTT CAGTGGTAAA TATCACCCTG GCCGATCGGG TGTTAGGCGA AATCCAGACC AGTATTATTA AGGGTGAACT CCCCACCGGC AGTAAGATTA ACGAGCAGGC ATTAGCCCGG AAGTATGGCA TCAGCCGAGG GCCCACTCGT GAAGCACTGC AAACCCTCGA GCAGCGTCGC CTAATCGTGC GAGTGCCTCA TGTCGGTGCT CGAGTCGCAG AGCTCACGGT AGATGAGCTA AACGATCTGT ATCAGCTGCG CAGCGTTTTA GAATGTATGG CCTGTGAGCT GGCGGCGCAG AACATCACTC AGGTTCAACT GGAAAAATTA CAGCAGGTAT TAACGGAGCA GGAAACGGCA CTATCTGATG GTGACAGCTA CTTTCAAGAG GAGGGGGATG TCGATTTTCA CTATCAGATA ATACTGGCGA GCGGCAATAA ACACCTGCAG GAGACCTTAG TCGGTGGCCT ATATCATCTG CTGCGTATGT ATCGTTACCA ATGCACTAAC AAGAGTCGTC CCGTTAAGGC GATTGCCGAT CACAGACGCA TTGTCGAAGC TATTGCCAGC CGCGACAGTG AACTGGCAGG CTTATTGATG CGCAGGCACA TAGAGCAGGG ACGAATTAAT ACTGAAAAAC GTTTGAAAGA GCTCCAAACA GAGTAA
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Protein sequence | MKHDLIMELN TSVATDTRAE SITSVVNITL ADRVLGEIQT SIIKGELPTG SKINEQALAR KYGISRGPTR EALQTLEQRR LIVRVPHVGA RVAELTVDEL NDLYQLRSVL ECMACELAAQ NITQVQLEKL QQVLTEQETA LSDGDSYFQE EGDVDFHYQI ILASGNKHLQ ETLVGGLYHL LRMYRYQCTN KSRPVKAIAD HRRIVEAIAS RDSELAGLLM RRHIEQGRIN TEKRLKELQT E
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