| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4165 |
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| Symbol | |
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| ID | 5612346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5121039 |
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| End bp | 5122712 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640935124 |
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| Product | acetolactate synthase 2 catalytic subunit |
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| Protein accession | YP_001475897 |
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| Protein GI | 157377297 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCAAG GGCAGATGAT GAGAGGCGCT GACGCGGTCA TCAAGGTATT AGCGGCTCAC
GGTGTCACCA ACATATTTGG TTACCCGGGT GGTGCCATCA TGCCAATTTA TGATGCTCTC
TATGGTGCGC CGGTAGAGCA TCTACTGAGC CGCCATGAGC AAGGTGCAGC GTTTGCTGCA
GTGGGCTATG CCCGCGCCAG CGGAAAGACC GGGGTCTGCT TCGCAACCTC GGGGCCAGGT
GCCACCAATC TGGTGACGTC ACTCGCCGAT GCTCTGCTCG ACTCTGTCCC TCTCGTTGCT
ATTACCGGTC AGGTATCGAC CGCCGTGATC GGTACCGATG CCTTTCAGGA GATCGATGTC
TTGGGGCTGT CACTGTCATG CACTAAGCAC AGCTTCATGG TCACAGAGAT GGATGAGCTG
ATCCCGACCC TGTATAAGGC TTTCGAAGTG GCTGCTTCTG GACGTCCCGG ACCTGTGCTT
GTCGATATCC CTAAAGATAT TCAGATAGGC ATGCTCGAAT ACAGGACGCC GCTGCAGGAG
CGGATATCTG AGCCCGAGTT CGATGGGGAG AAAATTGATG CGGCACTGTC TCTGCTCAGG
CAGGCCAAGC AGCCAATGCT CTATGTTGGC GGCGGTGTTG GGATGGCCAG TGCCGTCGAT
CAGTTGAGGG AGTTTATCGA TGTCACGGGT GTTCCTTCGG TTGCTACCCT GAAAGGCTTA
GGCTCAATTG GGAATGACAG CCCGGGTTAC TTAGGCATGT TAGGCATGCA CGGCTCGAAG
GCGGCGAACA TTGCCGTTCA GGAGTGCGAT CTGCTGATCG TCGTCGGTGC GCGTTTCGAT
GACCGCGTTA CCGGACGCCT GGCCTCATTT GCCGAGCATG CGAAGGTGAT CCATCTCGAT
ATCGATATTG CCGAACTGGG CAAGCTACGT CGCCCGGATG TCGCCATCGC CGGCGATCTT
CGTCAGATCT TACCGGCCTT GTGTGCAAAT CTTGAGATAG CCCCATGGCA GGACGAAGTG
GCGCAGCTCA AGCGTGAGCA TAATTGGAGC TACGACCGAC CCGGTGAGCT CATCTTCGCC
CCCGCTATGC TGAATCGTTT AGCCGATAAG TTACCCGAAG ACAGCGTGGT GTGTTGCGAT
GTCGGCCAGC ACCAGATGTG GGTTGCGCAG CATATGTGGT TCCGTAAACC CGAAGACCAT
CTCTCCAGTG CGGGCCTCGG TACCATGGGG TTCGGCTTAC CCGCCGCTAT CGGCGCTAAA
GTTTCCCGTC CCGGTGCGAC AGTGGTCGCC GTATCCGGAG ATGGCTCATT TATGATGAAT
GTTCAGGAGC TGACCACCAT CAAGCGTCGT AAGTTACCGG TCAAAATCTT ACTCATAGAT
AATCAGAAGT TGGGCATGGT GAAGCAGTGG CAGCAGCTGT TCTTCGAAGA GAGGTATAGC
GAGACCGATC TCTCCGATAA CCCCGACTTT GTCACTATGG CGTCGGCGTT CGACATTCCC
GGTCGCACTA TCACCACAAC CGATGAGGTC GAAGCGGCGC TGGATCACTT AGTCAATTGT
GAAGGGCCTT ACCTGCTGCA TGTTCGAATT GATGATGCTC ATAACGTGTG GCCACTGGTC
CCGCCAGGGG CATCGAATCG CGACATGATG GAAGAGATGG ATAAATCAAC ATGA
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| Protein sequence | MKQGQMMRGA DAVIKVLAAH GVTNIFGYPG GAIMPIYDAL YGAPVEHLLS RHEQGAAFAA
VGYARASGKT GVCFATSGPG ATNLVTSLAD ALLDSVPLVA ITGQVSTAVI GTDAFQEIDV
LGLSLSCTKH SFMVTEMDEL IPTLYKAFEV AASGRPGPVL VDIPKDIQIG MLEYRTPLQE
RISEPEFDGE KIDAALSLLR QAKQPMLYVG GGVGMASAVD QLREFIDVTG VPSVATLKGL
GSIGNDSPGY LGMLGMHGSK AANIAVQECD LLIVVGARFD DRVTGRLASF AEHAKVIHLD
IDIAELGKLR RPDVAIAGDL RQILPALCAN LEIAPWQDEV AQLKREHNWS YDRPGELIFA
PAMLNRLADK LPEDSVVCCD VGQHQMWVAQ HMWFRKPEDH LSSAGLGTMG FGLPAAIGAK
VSRPGATVVA VSGDGSFMMN VQELTTIKRR KLPVKILLID NQKLGMVKQW QQLFFEERYS
ETDLSDNPDF VTMASAFDIP GRTITTTDEV EAALDHLVNC EGPYLLHVRI DDAHNVWPLV
PPGASNRDMM EEMDKST
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