Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4149 |
Symbol | |
ID | 5612425 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5099752 |
End bp | 5100870 |
Gene Length | 1119 bp |
Protein Length | 372 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640935108 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001475881 |
Protein GI | 157377281 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.815582 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAT GGACCCTGAT TATGCTGATC ATCGCATTAC TGGCCTTTGG CTCGGTAATA GGTTTTAACA TCATGGTTAA AGGTAAAATT GCCGATGCCA TTGCCAATAT GCCTGAGCCT GAATCACCAG TGACCACCAT GACACTGATC ACTGAGAGCT GGCAGCCCAC CATAGATGCA ATCGGTTTTG TAGAACCAAA CCAAGGTGTC ACGATTGCCA ATGAACTGTC GGGTGTCGTC TCTGAGATAA ACTTTGAGAA TGGTAGCACC ATAAGTAAGG GCCACAGCCT GATTGTGCTC GACTCCAAGG TCGAAAAAGC CAACTTGAAG GGCAAGATGG TTCAATTACC TGCCGCCGAA GCCGATTTCA AACGACTCAC ACGCCTCTAC AAGCAAAAGT CGGTATCTAA GCAAGACTTA GATAATAGTG AATCAAAATA TCTGGCCCTG AAAGCCGATA TCGAAAGCTT AACGGCCACC ATAGATCGCA GGGAGATCGA TGCACCTTTC GATGGTTTAG TCGGAATTCG CAGCGTTAAC TTGGGTGAGT ATCTGCAGGC TGGTACCGAT ATCGTTCGTC TCGAAGATAT CAGCACCATG AAGATACGTT TTACCGTGCC ACAAACCCAG CTACCACGGA TCTCAACCGG ACAGACCATC CACGTCTTCG TCGATGCCTA TCCAGAGCAG CCATTTGAAG GAAAAATATC AGCCATTGAA CCTGCCGTTT TCTATCAGAG TGGTCTAATT CAAATTCAGG CAACCATTCC AAATATCGAT GCAAAGCTGC GTAGCGGTAT GTTTGCAAGA GTGGAAGTGC TACTGCCAGA GATGACCAAT CAGTTTGTAC TGCCTCAAAC CGCCATTAAC TTCACTCTCT ACGGCAACTC TATCTACATC CTTAACGAAG TTTCTGAAGA TGGAGAAACC GTAAAACGTG TTAAACAGAT AAATGTGGAA GTGCTTGAGC GTAACGGAAA TAACGCCTTA GTCACAGGTG AACTGAAAGC CAACGATCAG ATAGTGACCT CAGGGCAAAT TCGATTAAGT AACAACAGCA AAGTCAAAGT GACCGAGGAT AAAGCATTAA CTCCTCCAGC CACTATGCCA CAACTATAA
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Protein sequence | MKKWTLIMLI IALLAFGSVI GFNIMVKGKI ADAIANMPEP ESPVTTMTLI TESWQPTIDA IGFVEPNQGV TIANELSGVV SEINFENGST ISKGHSLIVL DSKVEKANLK GKMVQLPAAE ADFKRLTRLY KQKSVSKQDL DNSESKYLAL KADIESLTAT IDRREIDAPF DGLVGIRSVN LGEYLQAGTD IVRLEDISTM KIRFTVPQTQ LPRISTGQTI HVFVDAYPEQ PFEGKISAIE PAVFYQSGLI QIQATIPNID AKLRSGMFAR VEVLLPEMTN QFVLPQTAIN FTLYGNSIYI LNEVSEDGET VKRVKQINVE VLERNGNNAL VTGELKANDQ IVTSGQIRLS NNSKVKVTED KALTPPATMP QL
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