Gene Ssed_4149 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4149 
Symbol 
ID5612425 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5099752 
End bp5100870 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content46% 
IMG OID640935108 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001475881 
Protein GI157377281 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.815582 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAT GGACCCTGAT TATGCTGATC ATCGCATTAC TGGCCTTTGG CTCGGTAATA 
GGTTTTAACA TCATGGTTAA AGGTAAAATT GCCGATGCCA TTGCCAATAT GCCTGAGCCT
GAATCACCAG TGACCACCAT GACACTGATC ACTGAGAGCT GGCAGCCCAC CATAGATGCA
ATCGGTTTTG TAGAACCAAA CCAAGGTGTC ACGATTGCCA ATGAACTGTC GGGTGTCGTC
TCTGAGATAA ACTTTGAGAA TGGTAGCACC ATAAGTAAGG GCCACAGCCT GATTGTGCTC
GACTCCAAGG TCGAAAAAGC CAACTTGAAG GGCAAGATGG TTCAATTACC TGCCGCCGAA
GCCGATTTCA AACGACTCAC ACGCCTCTAC AAGCAAAAGT CGGTATCTAA GCAAGACTTA
GATAATAGTG AATCAAAATA TCTGGCCCTG AAAGCCGATA TCGAAAGCTT AACGGCCACC
ATAGATCGCA GGGAGATCGA TGCACCTTTC GATGGTTTAG TCGGAATTCG CAGCGTTAAC
TTGGGTGAGT ATCTGCAGGC TGGTACCGAT ATCGTTCGTC TCGAAGATAT CAGCACCATG
AAGATACGTT TTACCGTGCC ACAAACCCAG CTACCACGGA TCTCAACCGG ACAGACCATC
CACGTCTTCG TCGATGCCTA TCCAGAGCAG CCATTTGAAG GAAAAATATC AGCCATTGAA
CCTGCCGTTT TCTATCAGAG TGGTCTAATT CAAATTCAGG CAACCATTCC AAATATCGAT
GCAAAGCTGC GTAGCGGTAT GTTTGCAAGA GTGGAAGTGC TACTGCCAGA GATGACCAAT
CAGTTTGTAC TGCCTCAAAC CGCCATTAAC TTCACTCTCT ACGGCAACTC TATCTACATC
CTTAACGAAG TTTCTGAAGA TGGAGAAACC GTAAAACGTG TTAAACAGAT AAATGTGGAA
GTGCTTGAGC GTAACGGAAA TAACGCCTTA GTCACAGGTG AACTGAAAGC CAACGATCAG
ATAGTGACCT CAGGGCAAAT TCGATTAAGT AACAACAGCA AAGTCAAAGT GACCGAGGAT
AAAGCATTAA CTCCTCCAGC CACTATGCCA CAACTATAA
 
Protein sequence
MKKWTLIMLI IALLAFGSVI GFNIMVKGKI ADAIANMPEP ESPVTTMTLI TESWQPTIDA 
IGFVEPNQGV TIANELSGVV SEINFENGST ISKGHSLIVL DSKVEKANLK GKMVQLPAAE
ADFKRLTRLY KQKSVSKQDL DNSESKYLAL KADIESLTAT IDRREIDAPF DGLVGIRSVN
LGEYLQAGTD IVRLEDISTM KIRFTVPQTQ LPRISTGQTI HVFVDAYPEQ PFEGKISAIE
PAVFYQSGLI QIQATIPNID AKLRSGMFAR VEVLLPEMTN QFVLPQTAIN FTLYGNSIYI
LNEVSEDGET VKRVKQINVE VLERNGNNAL VTGELKANDQ IVTSGQIRLS NNSKVKVTED
KALTPPATMP QL