Gene Ssed_4133 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4133 
SymbolhemC 
ID5613132 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5052227 
End bp5053156 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content48% 
IMG OID640935088 
Productporphobilinogen deaminase 
Protein accessionYP_001475865 
Protein GI157377265 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0181] Porphobilinogen deaminase 
TIGRFAM ID[TIGR00212] porphobilinogen deaminase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCAAA ACGTCATTCG AATCGCAACA CGTAAAAGCC CACTTGCACT TTGGCAAGCA 
GAATTTGTGA AAGCTGAACT GGAAAAATTC CACGAAGGTT TGACGGTAGA ACTTCTACCT
ATGAGTACTA AAGGCGACAT CATCCTTGAC ACACCACTGG CAAAAGTAGG TGGTAAAGGG
CTATTTGTTA AAGAGCTGGA GGTTGCCATG CTTGAAGACA GAGCCGATAT TGCTGTGCAT
TCGATGAAAG ATGTTCCAGT CGACTTTCCA GAAGGTTTAG GCTTAGAAGT TATTTGTGAG
CGTGAAGACC CACGCGATGC TTTTGTATCT AATAACTACA AGAATATCAG CGAACTACCT
CAAGGTGCAG TCGTTGGTAC ATCGAGCCTA CGACGTCAAT GCCAGATCAG AGCGTCACGC
CCCGATCTTG TGATCAGAGA TCTGCGCGGC AACGTAGGTA CCCGTTTAGG AAAACTAGAT
GCGGGCAATT ATGACGCCAT TATTCTTGCG GCTGCAGGCC TTAAGCGCCT GAAGCTTGAG
GAGCGCATTA CCAGCTTTAT CTCTGCAGAA GAATCCCTAC CGGCCAATGG CCAGGGTGCA
GTAGGTATTG AGTGTCGCAT CAATGACGAA AGAGTAAAGG CGCTTCTTGC CCCACTCGAG
CACACTGAAA CACGTCACCG TGTTATCGCC GAGCGCGCAA TGAACACTCA TCTGGAAGGC
GGATGTCAGG TTCCTATCGG AGCCTATGCC GAGATCCAAG ATGATACACT GACGCTACGT
GGTTTAGTCG GTAATCCCGA TGGTAGCCAC ATCATCGAAG CGACAAAGGT TGGTTCTAAG
ACTGATGCAC AAGCAATTGG TGTTGCACTG GCTGAAGAGT TGCTCAGCAA AGGCGCTAAA
GCCATTCTCG ATGCCGTTTA TATCAAATAG
 
Protein sequence
MSQNVIRIAT RKSPLALWQA EFVKAELEKF HEGLTVELLP MSTKGDIILD TPLAKVGGKG 
LFVKELEVAM LEDRADIAVH SMKDVPVDFP EGLGLEVICE REDPRDAFVS NNYKNISELP
QGAVVGTSSL RRQCQIRASR PDLVIRDLRG NVGTRLGKLD AGNYDAIILA AAGLKRLKLE
ERITSFISAE ESLPANGQGA VGIECRINDE RVKALLAPLE HTETRHRVIA ERAMNTHLEG
GCQVPIGAYA EIQDDTLTLR GLVGNPDGSH IIEATKVGSK TDAQAIGVAL AEELLSKGAK
AILDAVYIK