Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4133 |
Symbol | hemC |
ID | 5613132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5052227 |
End bp | 5053156 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640935088 |
Product | porphobilinogen deaminase |
Protein accession | YP_001475865 |
Protein GI | 157377265 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCTCAAA ACGTCATTCG AATCGCAACA CGTAAAAGCC CACTTGCACT TTGGCAAGCA GAATTTGTGA AAGCTGAACT GGAAAAATTC CACGAAGGTT TGACGGTAGA ACTTCTACCT ATGAGTACTA AAGGCGACAT CATCCTTGAC ACACCACTGG CAAAAGTAGG TGGTAAAGGG CTATTTGTTA AAGAGCTGGA GGTTGCCATG CTTGAAGACA GAGCCGATAT TGCTGTGCAT TCGATGAAAG ATGTTCCAGT CGACTTTCCA GAAGGTTTAG GCTTAGAAGT TATTTGTGAG CGTGAAGACC CACGCGATGC TTTTGTATCT AATAACTACA AGAATATCAG CGAACTACCT CAAGGTGCAG TCGTTGGTAC ATCGAGCCTA CGACGTCAAT GCCAGATCAG AGCGTCACGC CCCGATCTTG TGATCAGAGA TCTGCGCGGC AACGTAGGTA CCCGTTTAGG AAAACTAGAT GCGGGCAATT ATGACGCCAT TATTCTTGCG GCTGCAGGCC TTAAGCGCCT GAAGCTTGAG GAGCGCATTA CCAGCTTTAT CTCTGCAGAA GAATCCCTAC CGGCCAATGG CCAGGGTGCA GTAGGTATTG AGTGTCGCAT CAATGACGAA AGAGTAAAGG CGCTTCTTGC CCCACTCGAG CACACTGAAA CACGTCACCG TGTTATCGCC GAGCGCGCAA TGAACACTCA TCTGGAAGGC GGATGTCAGG TTCCTATCGG AGCCTATGCC GAGATCCAAG ATGATACACT GACGCTACGT GGTTTAGTCG GTAATCCCGA TGGTAGCCAC ATCATCGAAG CGACAAAGGT TGGTTCTAAG ACTGATGCAC AAGCAATTGG TGTTGCACTG GCTGAAGAGT TGCTCAGCAA AGGCGCTAAA GCCATTCTCG ATGCCGTTTA TATCAAATAG
|
Protein sequence | MSQNVIRIAT RKSPLALWQA EFVKAELEKF HEGLTVELLP MSTKGDIILD TPLAKVGGKG LFVKELEVAM LEDRADIAVH SMKDVPVDFP EGLGLEVICE REDPRDAFVS NNYKNISELP QGAVVGTSSL RRQCQIRASR PDLVIRDLRG NVGTRLGKLD AGNYDAIILA AAGLKRLKLE ERITSFISAE ESLPANGQGA VGIECRINDE RVKALLAPLE HTETRHRVIA ERAMNTHLEG GCQVPIGAYA EIQDDTLTLR GLVGNPDGSH IIEATKVGSK TDAQAIGVAL AEELLSKGAK AILDAVYIK
|
| |