| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4130 |
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| Symbol | |
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| ID | 5613129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5047285 |
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| End bp | 5048529 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935085 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001475862 |
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| Protein GI | 157377262 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.638139 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGATCATT TTCTCTATAA AAATAATGAG CTACAGGCCG AAGATTGCCA GGTTGCCCAG
CTAGCTCAAA CCTACGGAAC ACCTTTATAC ATCTATTCTC GTGCGACATT AGAGCGTCAT
TGGCATGCTT TTGACCGTGC GGTCGCGAAT CATCCGCATC TCATCTGTTA TGCGGTGAAA
GCCAATTCAA ATATTGCTGT ACTCAATGTG CTTGCACGTT TGGGCAGTGG CTTCGATATT
GTCTCGGGTG GCGAACTCTC CCGGGTGATC GAGGCTGGGG GCTCACCCGA TAAGGTGGTT
TTCTCTGGTG TCGGTAAAAC GGTTGCCGAG ATGGAGATGG CATTAAACCT GGGAATTCAC
TGTTTCAATG TTGAATCGGC CGCAGAACTC GAACAACTCA ACCTTGTTGC GGTGCAGCTG
GGGAAAGTCG CACCGGTATC TTTGCGAGTG AACCCCGATG TCGATGCAGG CACTCACCCC
TATATCTCTA CCGGGCTTAA AGAGAATAAG TTTGGTATCG CCATGGATGA AGCCGAAGCT
ATCTTCGCTC GAGCGAACAG TTTGCCTGGA TTGGAAGTTA AGGGGGTCGA TTGTCATATC
GGCTCACAAT TGACAGAGAT ACAGCCGTTT CTCGATGCCA TGGATCGCAT GCTTGCCTTA
ATCGATAGAT TGGCCGAGCA GGGGATTAAC ATTGAGCATT TCGATGTCGG TGGCGGCTTA
GGCGTGACCT ATGATGATGA AACGCCTCCT CAGCCGGATG TTTACGCTGC CGCCTTGCTT
GAGCGTTTGG GCGGGAGAGA TCTAAAACTT ATTTTTGAGC CTGGTCGTGC GATCGCGGCC
AATGCCGGTA TTTTTGTTAC TCAGGTTCTC TACCTTAAAG GTAACAGTGA TAAACACTTT
GCCCTGGTCG ATGGTGCTAT GAACGATCTC ATTCGTCCTT CACTTTACAG CGCTTGGCAA
AACATAATTC CGGTGAAGCC TCGAGAAGGT GAAACACGTA ATTACGATAT CGTGGGCCCG
GTATGTGAAA CGGGGGATTT CTTAGGTAAA GACAGAGAAT TAAATCTCGA TGCCGGCGAT
TTTCTTGCGG TTAGATCATC GGGTGCTTAT GGTTTTACTA TGTCGTCGAA TTATAATTCC
CGTCCCAGAG CGGCCGAAAT CATGGTCGAT GGCAGTCGGG CACATCTTAT TCGTGAACGA
GAAAAATTGT CACAGCTATG GCAAGGTGAG CAACTACTGC CGTAA
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| Protein sequence | MDHFLYKNNE LQAEDCQVAQ LAQTYGTPLY IYSRATLERH WHAFDRAVAN HPHLICYAVK
ANSNIAVLNV LARLGSGFDI VSGGELSRVI EAGGSPDKVV FSGVGKTVAE MEMALNLGIH
CFNVESAAEL EQLNLVAVQL GKVAPVSLRV NPDVDAGTHP YISTGLKENK FGIAMDEAEA
IFARANSLPG LEVKGVDCHI GSQLTEIQPF LDAMDRMLAL IDRLAEQGIN IEHFDVGGGL
GVTYDDETPP QPDVYAAALL ERLGGRDLKL IFEPGRAIAA NAGIFVTQVL YLKGNSDKHF
ALVDGAMNDL IRPSLYSAWQ NIIPVKPREG ETRNYDIVGP VCETGDFLGK DRELNLDAGD
FLAVRSSGAY GFTMSSNYNS RPRAAEIMVD GSRAHLIRER EKLSQLWQGE QLLP
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