Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4119 |
Symbol | fis |
ID | 5611433 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5037788 |
End bp | 5038093 |
Gene Length | 306 bp |
Protein Length | 101 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640935074 |
Product | DNA-binding protein Fis |
Protein accession | YP_001475851 |
Protein GI | 157377251 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG2901] Factor for inversion stimulation Fis, transcriptional activator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000216214 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000721764 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTTGATC AGACTACTAA CACAGAAACT CATCAGCTTA CAGTTGGCAA AATTGAAACA GCTAACGGTA CTATCAAGCC TCAGTTATTA CGTGACGCTG TAAAGCGCGC AGTAACAAAC TTTTTCGCTC AGATGGACGG GCAAGAAGCT GAAGAAGTAT ATGAAATGGT GTTAAGCGAA GTTGAAGCAC CTCTGCTAGA TATCATCATG CAGCATACCC GCGGCAACCA GACTCGTGCA GCGAACATGC TAGGTATCAA CCGTGGTACT CTGCGTAAGA AATTGAAAAA GTACGGCATG AACTAA
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Protein sequence | MFDQTTNTET HQLTVGKIET ANGTIKPQLL RDAVKRAVTN FFAQMDGQEA EEVYEMVLSE VEAPLLDIIM QHTRGNQTRA ANMLGINRGT LRKKLKKYGM N
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