Gene Ssed_4112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4112 
Symbol 
ID5609768 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5029811 
End bp5030713 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content47% 
IMG OID640935067 
ProductLysR family transcriptional regulator 
Protein accessionYP_001475844 
Protein GI157377244 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.69133e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAGATAA ACGATCTAAG GCTTTTTGTT CGGGTTGCCG ATTGTGGCAG CATCACGGCC 
GCGGCTACAG AGTTAGAACT CTCTCCGGCT ACGGCGAGTG CAGCACTTAA GCGGTTAGAG
AAACAACTTG GAACCAGCTT GTTTATTCGC AGCACAAGAA GCCTTAGGCT TACCGATACC
GGTGAACGTT ATCTGATACA TTGTCGCAGA GCATTATCAG ACTTAGCGCT GGGCCAGCAA
GCGGTTAATG ACGTGAGGGA GAAGATCTCT GGTGTCGTCA GTCTTGCTGT GCCATCGGAT
GTGGGTCGCC ACGTTTTACT GCCTTGGCTA GATGAGTTTA TGGATCAATA TCCTGAACTC
AAGCTTAGGC TACATATCGG CGATACATTA TCTGATTTTT ATCATGATAA AGTCGATGTG
GCACTGCGTT TAGGTACGCC CAAAGACTCA TCCTTAGTCG CCTTTGAGAT AGCTAAAGTG
AAAAGGCTAC TCTGTGCCTC TCCAGCATAT ATCGCCAAGT ATGGTGAGGT CACCACAATC
GATCAGTTAT CAGATCACAA CTGTTTGTTT TTTATGTTAG AAGAACGGAC TCATGATCAG
TGGCGATTCA GCAAGAATGG CCGTGAATTT AAGGTCAGAG TCACGGGGAA TCGTACCTGT
AATGACGCTG AGGTTGCAAG GCGCTGGGCA GTGGCTGGTA AAGGTGTTGT TTACAAATCC
TCTCTGGATT TAGAGGGGGA TATTACCAGT GGAAGACTGG TACCAATGAT GACAGATTAT
CAAGGTGAAT CGGCCGATCT CTATCTTGTA TGCCCAGGAA GAGAGCATGT CACGCCAGTT
ATCTTGTTAT TAAGAGATAT GCTGAGAGAA AGGTGTAGGC AGAGGCTGGA AGCTAGGGGC
TAG
 
Protein sequence
MQINDLRLFV RVADCGSITA AATELELSPA TASAALKRLE KQLGTSLFIR STRSLRLTDT 
GERYLIHCRR ALSDLALGQQ AVNDVREKIS GVVSLAVPSD VGRHVLLPWL DEFMDQYPEL
KLRLHIGDTL SDFYHDKVDV ALRLGTPKDS SLVAFEIAKV KRLLCASPAY IAKYGEVTTI
DQLSDHNCLF FMLEERTHDQ WRFSKNGREF KVRVTGNRTC NDAEVARRWA VAGKGVVYKS
SLDLEGDITS GRLVPMMTDY QGESADLYLV CPGREHVTPV ILLLRDMLRE RCRQRLEARG