Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4109 |
Symbol | |
ID | 5612080 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5026203 |
End bp | 5027510 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640935064 |
Product | ATP-dependent RNA helicase RhlB |
Protein accession | YP_001475841 |
Protein GI | 157377241 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0297113 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000114369 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGAAA CACATTTATC TAATCAGAAG TTTGCCGACT TTTCTCTTCA AACAGAGATA AAAACAGCAC TTAACGAGAG CGGCTTTGAA TACTGCACGC CTATTCAAGC GTTATCTCTA CCTATTCTTC TTCAGAAAAA AGATATTGCG GGTCAAGCGC AAACTGGCAC GGGAAAAACG TTAGCTTTTC TTGTTGCCAC GTTCAATCAC CTGCTTACCA CCCCTATTCC GGAAGGCCGC CAGCTTAATC AGCCCAGAGC GATTATTATG GCCCCCACTC GTGAACTTGC AATTCAGATC GCCAAAGATG CGGATCTGCT TGCTAAACAC ACAGGACTGA AAGTCGGAAT AGTCTACGGT GGCGAAAGTT ATGAAGTTCA GCGTAAAGTG CTGGATAAAG GTGTCGATAT TCTTATCGGA ACTACTGGCC GTATCATAGA TTATGTTCGT CAGGGAATCA TTAACGTCAG TGCAATTCAA GCTGTCGTTT TAGATGAAGC CGATCGTATG TTTGACCTCG GCTTTATTAA AGATATTCGT TTCCTTTTCA GACGCATGCC AGATGCCAAG TCGCGTCTGA ATATGCTGTT TTCTGCTACT CTGTCGATGA AAGTGCAGGA GCTGGCTTAT GATCATATGA ATGAGCCAGA GAAAGTTGAA ATCGCACCGA ACGAAAAAAC CTCTAAGAAC ATCAAAGAGG AGATCTTCTA TCCATCTATG GATGAGAAGA TGCGTCTGTT GCTTACCCTT CTCGAGGAAG ATTGGCCGGA CAAGGCGATT GTATTCTCAA ATACCAAACA CAGCTGTGAA AAATTATGGT CTTGGTTAGA AGGCGATGGA CACCGAGTTG GATTATTGAC CGGCGATGTT CCACAAAAGA AACGTATTCG TATTCTTGAG CTGTTCACCG AAGGAAAACT TGATGTTCTG GTTGCTACCG ATGTAGCCGC TCGTGGTTTG CATATTTCAG ATGTTTCTCA CGTATATAAC TATGATCTTC CCGATGATTG CGAAGATTAT GTACACCGCA TTGGCCGTAC GGGTCGCGCG GGTAAGAAAG GTGTATCGGT TAGTTTTGCC TGTGAAGAGT ATGCGTTGAA CTTGCCTGCA ATTGAAGAGT ATATCAATCA CACTATTCCT GTGACTAACT ATGATAGCGA AGCGTTACTG GATGACATTC CAGCTCCTGT CAGAGTACAC AGAAAGCATA ACAGTCGACC TCAGGGACGT TCTGGCTCGG GTGGAAAGCC ACGTAGTGGC AATCGTAACG CCCCACGTCG TCACGACAAA ACTCGCAGAC ACTCGTAA
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Protein sequence | MSETHLSNQK FADFSLQTEI KTALNESGFE YCTPIQALSL PILLQKKDIA GQAQTGTGKT LAFLVATFNH LLTTPIPEGR QLNQPRAIIM APTRELAIQI AKDADLLAKH TGLKVGIVYG GESYEVQRKV LDKGVDILIG TTGRIIDYVR QGIINVSAIQ AVVLDEADRM FDLGFIKDIR FLFRRMPDAK SRLNMLFSAT LSMKVQELAY DHMNEPEKVE IAPNEKTSKN IKEEIFYPSM DEKMRLLLTL LEEDWPDKAI VFSNTKHSCE KLWSWLEGDG HRVGLLTGDV PQKKRIRILE LFTEGKLDVL VATDVAARGL HISDVSHVYN YDLPDDCEDY VHRIGRTGRA GKKGVSVSFA CEEYALNLPA IEEYINHTIP VTNYDSEALL DDIPAPVRVH RKHNSRPQGR SGSGGKPRSG NRNAPRRHDK TRRHS
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