| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4107 |
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| Symbol | |
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| ID | 5612078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5021924 |
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| End bp | 5024908 |
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| Gene Length | 2985 bp |
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| Protein Length | 994 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640935062 |
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| Product | putative oar protein |
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| Protein accession | YP_001475839 |
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| Protein GI | 157377239 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000254754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000800061 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGGAA GTAATGCGCT TAAGCGATTT ACACCAAGAA AAACGCTTGC TGCGATCGCC
GTAGGTTCAG TATTGATGAT GTCGGCACCG GGAGTGATGG CTGCCGATAC CAGTATCGTA
AAAGGTCATA TCGTTAGCAG CGAAGGAGCG ACAGTATCTA ATGCGACTAT CACGCTGAAA
CATAAGACCA AAGGTTTAGT ATATACAGTT GAAACCAATG AAAAGGGTGA TTACTTCTTA
CGTAATGTTC CCGTTGGTGA TTATGACGTC AGCATTACAA AAGACGGATT CACTAAGACT
CAAGAGTCTG GTGTAAGGGT TGTTATTGGA CAGCCGGTTA TTTTGGATGG CCAATTGACA
GCCGTGGGAG TTGATAACGT TGAGCGGATC GCTGTTACGG GCAGCATGAT CCGTAGAATC
GATACCTCTT CTTCTACTTC CGGGGTGACC TTTAGCCAGG AAGAGCTTAA TACTATGCCT
GTGGACTCAG GTTTTGAAAA TATTGCTCTA CTTGCTCCGG GTACTGCGGC TGCTGGTGGA
TCAAACTTTA ATGGTGCATC TAGTTTTGGT GGGTCATCTT CCGCTGAAAA TGCTTATTTC
TTAAACGGTC TTAATATTAC TAATATTAAG ACCGGTTTAA GCTCATTGTC CCTACCATGG
GAAGCTATCT CTCAAACTCA AATTAAGACT GGTGGCGTAA GTCCTGAATT TGGAGGAGCA
TTGGGCGGTA TTGTCAATGC TGTATCTAAG TCTGGTGATA ACGAGTTTAA GTTTGGTGGA
GAAATTCGAT ATGACCCATC TTCGCTTCGC GCTACTCAAG ATTCAATCTA TGATTACAAC
GGTGTAATGC AGGATGTCAC CGCACAGGAT AGCTATGACT TTAAGCAGGC AAAACTGTGG
GTCAGTGGGG CGATAGTAGA AGACTCACTG TTTTATTATG GGCTCTACGA GCCACGTAAG
GAGGAGTCCA AGTGGTCAGG ACAAACGACA ACTTCAGTAA GAGACCGTGA ATCAGATCGT
TGGTTTGCTA AGTTAGACTG GTACATGACA GAAGATCACT CTATCGGTTT CATGGCCATG
AATAACAAGC GTACCTGGAC AACCACAACA TATGCCTATG ATTGGGAAAC TGATGAGATA
GGCGCACAGA AAGGGGTTGA TTCTCCTGGC GAGGACGGTG GTCAACTCTA TAGCTTAAAC
TACAACGGTT ACCTTTCAGA TAACTTCTCC GTATCGGCAG TCGTTGGTCG TGTGGTCCAA
GAAGAGAATA CGGTTCCGGC TTCTACTGAC CCATCGGTAT GGGACGGACG CGATGGCTGG
GTGAAGTTAA GTCAAGAAAC GAATTCAACG CTATATAATG AAGAGTATAC CCGCGATCAG
GCAAGAATAG ACTTTAATTG GGATCTGGAA GAGCATGCGA TCAGCTTTGG GGTCGACTAT
ACCAATGTCG CCGTAAAGTA TTTAGAAACG CCTAATGGTA TCGATGAAGG TGCGGGGTGG
TGGCAAATCA GAACTGCCGG TGAAGGTAGC ATCTCTGGGG CGGCTCCCGG AGAAGATTAC
ATCCAACGTC GAGTAAGAGA CAGATTCACC GATTCAGATG TTAGTGCACT CGCTTTCTAC
GTGAACGACT CCTGGCAGGC AACTGATAGC TTAGTCCTGA ATATGGGACT GAGGTATACC
CAATCGGAAA ATACCATGTC AGATGGTACA GCCTATGTCG ATTTTGACAA CCAGATTGCG
CCAAGACTGC AAGCTATCTA TGATCTTCAT GGTGATGGTA GTGCCAAAGT GTTTGCGACA
TATGGACGAT ATTACCAACC GGTTTCGGCA AACATGAACA TTACTCAGGG AAGTTCGGCG
AGTGACCTTA TCGATTTCTA TGCCTTCGAT GAAGTGGATG TGAATGGCTA TCCAGTATTG
TTACCAGATG GCTCTCCGAG TCGTGGTGAG CTGCTAAGAG ATACCTATGT ACAGCAAGAC
AGCTCAGATT CGAATGCAGG TGAAATAGCA TCGACAACTT TGAAGCCTAT GTATTCAGAT
GAATTTACTG TCGGTTATCA GCAAGAAGTG TTCGATACCA TGTCTGCAGG TGCTCGAGTG
ATCTGGCGAG ACCTTGGCCG TGGCGTAGAA GATTCAGATA TCACTTCTCC GTTAAATAAG
AAGCTTGCCG AGTTAGGCTA TGATTCAGTC GGTAGTACCT GGTTTTTACA TAACCCAGGA
GAGAGCTTAA CTATTGCCAA AGATTTCGAT GGCGATGGTC AAGTTGACAA TGTAACGCTT
TCTCCTGAGG AGATGGCCCT TCCTGGGATG CAACGTCATT ATCTGGCACT AGAGTTAACA
CTCGATGGCA ATGTTACCGA AGATTTCAGA ATCAACTCCT CTTATACCCT GTCTGATAAC
TGGGGCAACA CTGAAGGGCT TGTTAAAACC GATAATAACC AAGCCGATCC GGGTTGGACT
ACCTCTTATG ACTATGGTGA CATCATGGAT CATTCATACG GCGATCTGCC AAATGATCAC
ACTCATGTCT TCAAGTTCAA TGGTAGCTAT GATATTACCG AAGAGCTGAT TTTTGGTTTT
GTTACAAGCA TCAGTTCCGG CCGTCCACAA AACTATCTCG GCCGCCATCC TTTAGGTGTT
GATAGCTGTG AAGAAGGTAA TGTTTGGGAT GCATGTGAGG GTTACTATGG CCACTCAAGT
TTCTATGATG AGAACGAAGA TCCTGCACCG CGTGGTAGCC AAGGGAACCT CCCATGGGTG
ACTAAGTTAG ATCTCTCGTT AACCTATATG ACAGATCTAT TTGGTGGAGA CTTTACCGTC
AAAGGAACCG TTTATAATGT ACTTAATACC GATACGGCTA CAAATATAGT AGAAACAAGA
ACGCGTGACG GGGAAGATGG ATTGGAGTTA AATCCTGATT ATGGTCGAGT CACTGACCGT
CAAGAGGAGC GATTCTTCTC GTTGGTTGCA CGCTACCAGT TCTAA
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| Protein sequence | MSGSNALKRF TPRKTLAAIA VGSVLMMSAP GVMAADTSIV KGHIVSSEGA TVSNATITLK
HKTKGLVYTV ETNEKGDYFL RNVPVGDYDV SITKDGFTKT QESGVRVVIG QPVILDGQLT
AVGVDNVERI AVTGSMIRRI DTSSSTSGVT FSQEELNTMP VDSGFENIAL LAPGTAAAGG
SNFNGASSFG GSSSAENAYF LNGLNITNIK TGLSSLSLPW EAISQTQIKT GGVSPEFGGA
LGGIVNAVSK SGDNEFKFGG EIRYDPSSLR ATQDSIYDYN GVMQDVTAQD SYDFKQAKLW
VSGAIVEDSL FYYGLYEPRK EESKWSGQTT TSVRDRESDR WFAKLDWYMT EDHSIGFMAM
NNKRTWTTTT YAYDWETDEI GAQKGVDSPG EDGGQLYSLN YNGYLSDNFS VSAVVGRVVQ
EENTVPASTD PSVWDGRDGW VKLSQETNST LYNEEYTRDQ ARIDFNWDLE EHAISFGVDY
TNVAVKYLET PNGIDEGAGW WQIRTAGEGS ISGAAPGEDY IQRRVRDRFT DSDVSALAFY
VNDSWQATDS LVLNMGLRYT QSENTMSDGT AYVDFDNQIA PRLQAIYDLH GDGSAKVFAT
YGRYYQPVSA NMNITQGSSA SDLIDFYAFD EVDVNGYPVL LPDGSPSRGE LLRDTYVQQD
SSDSNAGEIA STTLKPMYSD EFTVGYQQEV FDTMSAGARV IWRDLGRGVE DSDITSPLNK
KLAELGYDSV GSTWFLHNPG ESLTIAKDFD GDGQVDNVTL SPEEMALPGM QRHYLALELT
LDGNVTEDFR INSSYTLSDN WGNTEGLVKT DNNQADPGWT TSYDYGDIMD HSYGDLPNDH
THVFKFNGSY DITEELIFGF VTSISSGRPQ NYLGRHPLGV DSCEEGNVWD ACEGYYGHSS
FYDENEDPAP RGSQGNLPWV TKLDLSLTYM TDLFGGDFTV KGTVYNVLNT DTATNIVETR
TRDGEDGLEL NPDYGRVTDR QEERFFSLVA RYQF
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