| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4088 |
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| Symbol | |
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| ID | 5613658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5002722 |
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| End bp | 5003177 |
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| Gene Length | 456 bp |
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| Protein Length | 151 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935043 |
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| Product | 3-dehydroquinate dehydratase |
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| Protein accession | YP_001475820 |
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| Protein GI | 157377220 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0757] 3-dehydroquinate dehydratase II |
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| TIGRFAM ID | [TIGR01088] 3-dehydroquinate dehydratase, type II |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGCGGCA AGGCAAAGAT CTTACTGGTG AACGGACCGA ACCTTAATCT ACTAGGACGC
AGAGAGCCCG GACATTATGG GCATCACACC TTAGATCAGA TAGTCAAAGA GCTGCAAGAT
GAGTCGACAA GCTCAGGCGT TGTCCTCGAG CATATACAAT CAAATGCAGA GCATGAGCTA
ATCGATGCCA TTCACGCAAC GGAAGCCGAA TTCATCATCA TTAATCCCGC CGCGTTTACT
CACACGAGTG TCGCGCTAAG AGACGCCATT CTGGGTGTAT CGATTCCCTT TATCGAAGTA
CATCTCTCTA ATGTGCATGC ACGGGAGCCT TTTCGTCACC ACTCCTATTT CTCAGACAAA
GCGGTCGGCG TGATCTGCGG TCTGGGCGCA CAGGGTTATC AGTTTGCACT GCAATCGGCG
ATCAGCCGGC TCAAGGCTAA ATCGGCAGAG CATTAA
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| Protein sequence | MGGKAKILLV NGPNLNLLGR REPGHYGHHT LDQIVKELQD ESTSSGVVLE HIQSNAEHEL
IDAIHATEAE FIIINPAAFT HTSVALRDAI LGVSIPFIEV HLSNVHAREP FRHHSYFSDK
AVGVICGLGA QGYQFALQSA ISRLKAKSAE H
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