| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4081 |
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| Symbol | |
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| ID | 5609934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4994147 |
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| End bp | 4997395 |
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| Gene Length | 3249 bp |
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| Protein Length | 1082 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640935036 |
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| Product | CzcA family heavy metal efflux protein |
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| Protein accession | YP_001475813 |
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| Protein GI | 157377213 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTACAGA GACTTATTGA GGTTGCGATC CGTAACCGTC TGTTGGTGGT GTTGGCATTG
ATCGCGGTTG CGATCGCCAG TGTGGCCATG TTACCCAAAT TAAATCTGGA TGCCTTTCCG
GATGTGACCA ATGTGCAGGT TACGGTTAAT ACCGAAGCCG AAGGCCTGGC GGCCGAAGAA
GTTGAAAAAC TGATCAGTTA TCCGGTCGAA TCGGCCATGT ACGCGCTTCC TGCGGTAACT
GAGGTGCGTT CGCTCTCCCG TACCGGGCTT TCTCTGGTGA CCGTAGTGTT CGCCGAAGGG
ACCGATATCT ACTTCGCTCG TCAGCAGGTG TTTGAGCAGT TGCAAGCGGC AAGAGAGATG
ATCCCCGACG GTATCGGTGT GCCGGAAATT GGCCCCAATA CCTCCGGACT GGGCCAGATA
TATCAGTATA TCCTGCGGGC CGCACCCGGC TCAGGTATCG ATGCTGCCGA GCTTCGTAGC
CTGAATGATT ATCTGGTTAA GCTCATCATG ATGCCTGTGG GTGGTGTCAC CGATGTACTC
TCATTTGGTG GTGACGTGCG CCAGTATCAG GTGCAGATCG ATCCTAACAA GTTGCTGAGC
TTTGGTTTGT CGATGGAGCA GGTCACCACG GCACTGGAGA GTAATAACCG TAATGCCGGT
GGTTGGTTTA TGGACCAGGG TCAGGAGCAG TTGGTTGTTC GTGGCTACGG CTTGCTGCCT
TCCGGCGATG AGGGACTGAA GGCGATAGCT TTGATCCCGC TAACCGAATT TGCGGGTACC
CCGATCCGGG TTGGCGATAT CGCCAAGGTT GATTACGGCA GTGAGATAAG AGTGGGCGCT
GTGACCATGA CACGCAGGGA TGAAGCCGGT ACGCCACAGG TGCTTGGCGA AGTCGTAGCA
GGCGTTATCT TAAAGCGTAT GGGGGCAAAC ACTAAGGCGA CTATCGATGA TATCAATGCC
AGAACCTCAT TAGTTGAACA GGCACTACCC GATGGTGTGA CGTTTGAGGT CTTCTACGAT
CAAGCCGATC TCGTTGAGCA GGCGGTGACT ACGGTACGCG ATGCGCTCTT GATGGCCTTC
GTGTTTATTG TGGTTATCCT GGCGCTGTTT TTGGTAAACA TCCGTGCCAC CATGCTGGTG
CTGCTTTCTA TACCGGTATC TATCTGCTTA GCTTTGATGG TGATGTCCTA TTTCGGCATG
TCGGCTAACC TGATGTCGCT CGGCGGTCTG GCGGTTGCCA TCGGTATGTT GGTCGATGGC
TCGGTGGTGA TGGTTGAGAA TATCTTTAAG CATCTGACCC AGCCCGATAG ACGTCATTTA
GGCGCCGCGC GCGAGCGCGC CGATGGCGAG GTCGATCCTC ACCATGTAGA TGAAGATCAG
CACGGTATCG CCATGCGAGT CATGTTGGCG GCTAAAGAAG TCTGTAGCCC TATCTTCTTT
GCTACGGCGA TTATCATAGT GGTATTTGCG CCATTGTTTG CACTGGAAGG GGTCGAAGGT
AAGCTATTCC AGCCTATGGC AGTGAGTATT ATCTTAGCCA TGCTCTCGGC CCTGGCCGTG
GCCTTGGTTG CAGTACCAGC CTTAGCCGTT TTCCTCTTTA AGCGCGGTAT CACACTCAGA
GATAGTGCGG TATTAAAGCC TATCGAGAAA GGGTATCGCC GCCTGCTAAC GGCAACCATG
GCAAGGCCTA AGACTGTAGT GATCACCGCG CTTACCCTGT TTGTGCTGAG TATGTCGTTG
TTGCCTCAAT TGGGAACCGA GTTTGTTCCC GAGCTCGAAG AGGGCACGAT TAACCTGAGG
GTCACCTTAG CACCGACCGC CAGTCTGGGC ACCTCCCTCG ATGTGGCGCC TAAGCTGGAA
AAGATGTTGC TGGAGTTCCC TGAGGTCGAG TATGCGCTGA GTCGAATCGG TGCGGCAGAG
CTTGGGGGCG ATCCTGAGCC TGTGAATAAT ATCGAGATCT ATATCGGTCT GAAGCCTGTC
GAGCAGTGGC AGTCAGCATC GAGTCGGGTT GAACTGCAGA AGCTGATGGA AGCCAAACTC
AGTGTCTATC CGGGTCTTCT GTTTACCTTC TCTCAACCTA TCGCGACGCG AGTCGATGAG
CTGTTATCCG GCGTAAAGGC GCAGCTGGCG ATTAAAATCT TCGGGCCTGA TCTGGATGTA
TTGTCACAAA GTGGTGAGAG GCTAACCGAG TTGGTATCAA CCATCCCGGG TGCGGTCGAT
GTGTCACTGG AGCAGGTGAG TGGTGAAGCT CAGTTAGTGG TTCGTCCAAA GCGCGATCTG
CTTGCCCGCT ACGGAATCAG TGTCGATGAA GTGATGAGCC TGGTTAGTCA GGGGATCGGC
GGTGTAAGTG CCGGTCAGGT GATAGATGGT AATGCCAGAT ATGACATCAA CGTGCGACTC
GCCGAAGAGT ATCGAAATGC GCCCGATGCG CTCAGAGATC TGATCCTCAG TGGCGTTAAC
GGTGCTACCG TGCGTTTAGG CGAGGTGGCC AGTGTCGAAG TTGAGATGGC TCCACCGAAT
ATCAGACGTG ACGATGTTCA ACGTCGCGTG GTGGTTCAGG CGAACGTATC GGGCCGCGAT
ATGGGCTCTG TGGTTAACGA TATCTACGCC ATTATTCCAG AGGCGAAGCT GCCTGCGGGC
TATACCGTAG TGGTTGGTGG TCAATATGAG AATCAGCAGC GTGCTCAGCA AAAACTGATG
TTGGTTGTGC CTATCTCAAT TGGCTTAATC GCGCTGTTAC TCTATTTCTC GTTTGGTTCT
ATTAAGCAGG TCGGTCTGAT CATGGCCAAT GTGCCTTTAG CCTTGATTGG TGGCGTAGTG
GCGCTGTTCA TCAGTGGTAC CTACCTGTCG GTTCCAAGTT CAATCGGTTT TATCACCCTA
TTTGGTGTCG CGGTATTGAA TGGTGTGGTG CTGGTGGACT CCATCAATCA GCGTCGACAG
TCGGCATTAG ATGACGCCTC TGGTGCTAAT GGCGGTGGAG AGAGCCTCTA TGATTCTGTT
TATGAGGGAA CGGTAGGACG ATTGCGCCCG GTATTGATGA CGGCATTGAC CTCGGCGCTC
GGACTTATTC CTATCCTTAT CTCGACCGGA GTGGGAAGTG AGATCCAGCA GCCTTTGGCA
GTTGTGATCA TAGGCGGCCT GTTTAGCTCG ACAGCCCTGA CTCTGTTGGT ACTACCGACC
TTATATCGTT GGTTATATCA GGGTAAGGAT GTAACCGGTG TGAGCAGAGA GCTTGAGGCG
TTAGATTAG
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| Protein sequence | MLQRLIEVAI RNRLLVVLAL IAVAIASVAM LPKLNLDAFP DVTNVQVTVN TEAEGLAAEE
VEKLISYPVE SAMYALPAVT EVRSLSRTGL SLVTVVFAEG TDIYFARQQV FEQLQAAREM
IPDGIGVPEI GPNTSGLGQI YQYILRAAPG SGIDAAELRS LNDYLVKLIM MPVGGVTDVL
SFGGDVRQYQ VQIDPNKLLS FGLSMEQVTT ALESNNRNAG GWFMDQGQEQ LVVRGYGLLP
SGDEGLKAIA LIPLTEFAGT PIRVGDIAKV DYGSEIRVGA VTMTRRDEAG TPQVLGEVVA
GVILKRMGAN TKATIDDINA RTSLVEQALP DGVTFEVFYD QADLVEQAVT TVRDALLMAF
VFIVVILALF LVNIRATMLV LLSIPVSICL ALMVMSYFGM SANLMSLGGL AVAIGMLVDG
SVVMVENIFK HLTQPDRRHL GAARERADGE VDPHHVDEDQ HGIAMRVMLA AKEVCSPIFF
ATAIIIVVFA PLFALEGVEG KLFQPMAVSI ILAMLSALAV ALVAVPALAV FLFKRGITLR
DSAVLKPIEK GYRRLLTATM ARPKTVVITA LTLFVLSMSL LPQLGTEFVP ELEEGTINLR
VTLAPTASLG TSLDVAPKLE KMLLEFPEVE YALSRIGAAE LGGDPEPVNN IEIYIGLKPV
EQWQSASSRV ELQKLMEAKL SVYPGLLFTF SQPIATRVDE LLSGVKAQLA IKIFGPDLDV
LSQSGERLTE LVSTIPGAVD VSLEQVSGEA QLVVRPKRDL LARYGISVDE VMSLVSQGIG
GVSAGQVIDG NARYDINVRL AEEYRNAPDA LRDLILSGVN GATVRLGEVA SVEVEMAPPN
IRRDDVQRRV VVQANVSGRD MGSVVNDIYA IIPEAKLPAG YTVVVGGQYE NQQRAQQKLM
LVVPISIGLI ALLLYFSFGS IKQVGLIMAN VPLALIGGVV ALFISGTYLS VPSSIGFITL
FGVAVLNGVV LVDSINQRRQ SALDDASGAN GGGESLYDSV YEGTVGRLRP VLMTALTSAL
GLIPILISTG VGSEIQQPLA VVIIGGLFSS TALTLLVLPT LYRWLYQGKD VTGVSRELEA
LD
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