| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4064 |
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| Symbol | |
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| ID | 5612895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4976421 |
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| End bp | 4977335 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640935019 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001475796 |
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| Protein GI | 157377196 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTATCACC TCAAGGATCT TCAATTAGCC ATACGTATCG CCGATCTACA AAGCGTGTCG
GCGGCGGGTC GCGAACTCGG CATGACTCCG GCCGCGGCCA GTGCGGCTTT GCAGCGGCTG
GAAAGAAAGC TCAATTGTCT GCTGTTTGCC CGCTCGACCA GAAAAATGAA ACTCACCGAA
GAGGGCCACC TGTTTATCGA AACCGGTCGT AAAGCACTTC AGCTACTCGA CGGTGCGAGT
AATGCCTTAG CCGATAATCG GGGTGAACTG AAAGGTGAGA TCCGTATAGC TCTCCCCTCC
GACTTAGGAA GAAATATCGC CAGGGAGTGG CTCGATGAGT TCGCGCACAG TGCGCCGGGG
ATAAAATTAA GCCTCTTTAT TGGCGATCAG ATGGCGGATC TTATCGACCA GAATGTTCAC
CTGGCCCTGC GCTACGGGCA TCTGGAAGAC TCAAACCTGA TGAGGCGACA ACTCGCCATG
ATGCCCCGTG TCGCGGTAGC CTCCCCGGAG TATATCGAAC AACATGGTCT GCCCACTCAC
CCAAAAGAGC TCACCAACCA CAAGATACTG CTCCTCAATC GCGGCGGTGA GCCCTGGCAC
AAGTGGTTAT TTAACCATAA AGGTCGTCAA TACGAAGTCG AGGTCAAAGG GGAGAGAAGT
TGTAATGATG GTGCCATCAT CAAAGACTGG GCGCTCGCAG GTGAAGGCAT TGCCTATAAG
AGCTGGTTTG ATGTCGCCAA AGAGGTCCAC GATGGTCAGT TAAGCGTGCT GTTTGGCGAT
CAACTGGCCG AAAGTATTCC ATTGCAACTG GTCTATCTGC AAACGGATTA CCCGAGCCAC
AAGGTCCGAA CTGTCATCGA CTTTCTCAAA CAGAAATCAC AAGCGTTTGA AGAGGCCTAT
CCTCTGTTAA CTTAA
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| Protein sequence | MYHLKDLQLA IRIADLQSVS AAGRELGMTP AAASAALQRL ERKLNCLLFA RSTRKMKLTE
EGHLFIETGR KALQLLDGAS NALADNRGEL KGEIRIALPS DLGRNIAREW LDEFAHSAPG
IKLSLFIGDQ MADLIDQNVH LALRYGHLED SNLMRRQLAM MPRVAVASPE YIEQHGLPTH
PKELTNHKIL LLNRGGEPWH KWLFNHKGRQ YEVEVKGERS CNDGAIIKDW ALAGEGIAYK
SWFDVAKEVH DGQLSVLFGD QLAESIPLQL VYLQTDYPSH KVRTVIDFLK QKSQAFEEAY
PLLT
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