| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4032 |
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| Symbol | |
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| ID | 5610010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4941739 |
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| End bp | 4942227 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934987 |
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| Product | transcriptional regulatory protein |
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| Protein accession | YP_001475764 |
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| Protein GI | 157377164 |
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| COG category | [K] Transcription |
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| COG ID | [COG1846] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0606552 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGTAG ACAACATAGA GCCTAGGCAG AGCCTCGAAG TCAGTTTAGA TATGGACAGC
TTCTTTCCCT ATCAGCTGAC ACAACTACAA TCGAGTGTGA GCGATAACAT TGCCGAGATC
TACACGGGTC ACTTCGAACT CACTCGGCAT GAATGGCGAA TACTCGCCGT ACTTGGCACG
GGTAAGGCAC TCTCGGCTAA ACAGATAGGT TTAATGATCA ACCTGGAAAA AATGCAAACC
AGTCGCGCCC TTGCCAGAAT GATTAATAAA GCTTTAATCG CAAAAGTCGA AGACAGGAGT
GATAAACGCT CATCTCTATT AAAATTAACC CCAGAAGGAC TCAGAGTCCA TCGGGAGTTA
GCCCCTATGG TTTTAGCAAG AGAGCAGGCA TTGTTATCGG TGCTGAGTGA AGATGAACAT
GAGCAACTCA AGCAGATCAT GGATAAGCTG TTTGCCCAAT CTAAGGCGAT ACAGACACAA
GCGAAATAA
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| Protein sequence | MAVDNIEPRQ SLEVSLDMDS FFPYQLTQLQ SSVSDNIAEI YTGHFELTRH EWRILAVLGT
GKALSAKQIG LMINLEKMQT SRALARMINK ALIAKVEDRS DKRSSLLKLT PEGLRVHREL
APMVLAREQA LLSVLSEDEH EQLKQIMDKL FAQSKAIQTQ AK
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