| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4027 |
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| Symbol | |
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| ID | 5613988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4933462 |
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| End bp | 4936299 |
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| Gene Length | 2838 bp |
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| Protein Length | 945 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934982 |
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| Product | excinuclease ABC, A subunit |
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| Protein accession | YP_001475759 |
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| Protein GI | 157377159 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0178] Excinuclease ATPase subunit |
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| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000630275 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACAAGA TTGAAGTACG TGGCGCCCGC ACCCACAATC TAAAAAACAT CAACCTGACA
ATTCCCAGAG ACAAGTTAAT CGTAATTACC GGCCTATCGG GATCGGGAAA ATCGTCTCTG
GCATTCGATA CTCTCTATGC CGAAGGCCAG AGACGTTACG TCGAATCACT ATCGGCTTAT
GCGCGCCAAT TTTTAAGCTT AATGGAGAAG CCCGATGTCG ACCATATCGA AGGCTTAAGT
CCGGCCATAT CGATCGAGCA AAAATCGACG TCTCATAACC CACGTTCGAC AGTGGGAACC
ATCACAGAGA TCTACGATTA CCTACGTTTG CTCTTTGCAC GCGTAGGTGA GCCACGCTGT
CCCACTCATG GCCAACCATT GGCGGCGCAA ACCATCAGCC AGATGGTCGA TAAAGTCATT
GAGTTACCCG AAGGCAGTCG CCAGATGCTG CTGGCCCCGG TGGTCAATAA CCGTAAAGGC
GAACATGTAA AACTGCTGGA CAGTCTCTCT GCCCAAGGAT TTATTCGCGC CCGCATAGAT
GGAGAGGTCT GCGATCTCAC CGATCCGCCA GAGCTTGAAC TGCATGTTAA GCACACCATC
GAGGTGGTCG TCGATCGATT TAAGGTTCGT GAAGAGATCA AGCAGAGACT CGCCGAGTCA
TTCGAGACAG CCCTCGAACT TTCCGGTGGT ATTGTCACCG TCGCGAATAT GGACAGTGAC
AAGTCAGCCC AGAGCGAAGA ACTCTTGTTC TCCGCCAATT TTGCCTGTCC TCACTGTGGT
TACTCGATGG CTGAACTCGA GCCAAGAATA TTTTCCTTCA ATAATCCGGC CGGAGCCTGT
GGCACCTGTG ACGGATTAGG CGTGCAGCAG TTCTTCGACT CTGAGCGCGT GATCATGAAC
TCTGAACTTT CATTGGCTGG CGGTGCGATT CGAGGCTGGG ATAGACGCAA CTTCTATTAC
TTCCAGATGC TCACCTCTCT GGCCGAACAT TATAAGTTTG ATATTGAAAA GCCATTTCAA
CAACTCAGTG CAGAAGTTAA AAAGCTGGTG CTCTACGGTT CAGGTACCGA GAGTATCGCC
TTTAAATATA TCAATGACCG TGGGGATGTG GTTGTTCGTA ATCATCCTTT CGAAGGCATT
CTCAATAACA TGGACAGGCG TTACCGTGAG ACTGAGTCTA ATGCGGTCCG AGAAGAGTTA
GCTAAGTTTA TAAACACTCA ATCTTGTCAG AGCTGCGGCG GTTCACGTCT GCGTGAAGAG
GCGAGAAATG TCTTTATCAA AGATCTGAAC CTTCCCATGT TGACCCAATG GTCAATCGGT
GAAGCGATGG ACTACTTCTC CACCTTAGAG CTCACAGGCC AAAAGGCACA GATCGCCGAG
AAGATCCTTA AAGAGGTTCG CGACAGATTA GGCTTCCTCG TTAATGTCGG CCTTAATTAC
CTGAGCCTGT CACGCTCGGC CGATACTCTT TCCGGCGGTG AGGCACAACG TATCAGACTC
GCAAGTCAGA TTGGTGCGGG ACTGGTCGGT GTGATGTATG TGCTCGATGA ACCCTCGATC
GGCCTGCATC AACGTGACAA TGAACGCCTG CTACAAACGC TTATCCACCT CAGGGATCTG
GGAAATACCG TCATCGTCGT CGAACATGAT GAAGATGCCA TTAAAATGGC CGATCATGTT
ATCGATATCG GTCCGGGTGC CGGCGTCCAC GGTGGTGAGG TTATCAGTGA TGGTACGTTA
GAAGATATCC TCAACTGTGA AGAGTCTATT ACCGGCCAAT ACCTCTCAGG CAAGAAACAG
ATCCACATCA CCGAAGACCG TGTAGCCTAC AATGGCGATA AGCTTATCGA GCTGTTTGGG
GCTAGCGGTA ATAACCTCAA AGATGTCGAT CTCGCGATCC CTGTAGGTTT GTTCACCTGT
GTCACCGGCG TATCCGGCTC CGGAAAGTCC ACACTGATTA ACGATACTTT TTACAAGATT
GCCCACAGGC AACTTAATGG CGCGACCGTC GATGAGCCCG CACCATACAA AAGCATCGAG
GGGATGGATC ATTGCGATAA GGTGGTCGAT ATCGACCAGA GTCCCATTGG CCGAACACCA
AGATCGAATC CTGCCACCTA TACGGGTATC TTCACACCGA TAAGGGAGCT GTTTGCGGCA
ACTCAGGAAT CTCGAACCCG TGGCTACAAG CCAGGTCGTT TCTCTTTCAA TGTGAAAGGC
GGACGCTGTG AAGCCTGTCA GGGTGATGGA CTCATTAAAG TTGAGATGCA CTTCCTGCCC
GATGTCTATG TGCCATGTGA CAGCTGTAAG AGTAAGCGGT ATAACCGCGA AACCTTAGAG
GTGAAATACA AGGGTAAGAG TATCCACGAG GTGCTCTCTA TGACCGTCGA AGAAGCACGC
CCCTTCTTCG ATGCCGTTCC GGCCATCGCC CGTAAACTGC AGACCCTGAT AGAAGTCGGC
CTCTCCTATA TCAGCCTTGG ACAGAGTGCG ACCACCTTGT CCGGCGGTGA GGCTCAGCGA
GTCAAATTGG CTAAGGAGCT TTCAAAGCGT GATACCGGCC AGACCCTCTA TATTCTCGAT
GAACCGACGA CGGGCTTGCA CTTCGCCGAT ATTCAGCTCT TGTTAGACGT ACTACATAGG
CTGAAGGCCC ACGGCAACAC TATCGTGGTC ATCGAGCATA ACTTAGATGT CATCAAGACA
GCCGACTGGA TCATCGATCT GGGTCCCGAA GGGGGCTCGG GAGGCGGAAC CATTCTGGTA
ACCGGTACGC CAGAGCAGGT AGCGGAACAT GAAGCGTCTC ACACGGCCCG ATTCCTCAAG
CCGCTATTAG AGAAGTAG
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| Protein sequence | MDKIEVRGAR THNLKNINLT IPRDKLIVIT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY
ARQFLSLMEK PDVDHIEGLS PAISIEQKST SHNPRSTVGT ITEIYDYLRL LFARVGEPRC
PTHGQPLAAQ TISQMVDKVI ELPEGSRQML LAPVVNNRKG EHVKLLDSLS AQGFIRARID
GEVCDLTDPP ELELHVKHTI EVVVDRFKVR EEIKQRLAES FETALELSGG IVTVANMDSD
KSAQSEELLF SANFACPHCG YSMAELEPRI FSFNNPAGAC GTCDGLGVQQ FFDSERVIMN
SELSLAGGAI RGWDRRNFYY FQMLTSLAEH YKFDIEKPFQ QLSAEVKKLV LYGSGTESIA
FKYINDRGDV VVRNHPFEGI LNNMDRRYRE TESNAVREEL AKFINTQSCQ SCGGSRLREE
ARNVFIKDLN LPMLTQWSIG EAMDYFSTLE LTGQKAQIAE KILKEVRDRL GFLVNVGLNY
LSLSRSADTL SGGEAQRIRL ASQIGAGLVG VMYVLDEPSI GLHQRDNERL LQTLIHLRDL
GNTVIVVEHD EDAIKMADHV IDIGPGAGVH GGEVISDGTL EDILNCEESI TGQYLSGKKQ
IHITEDRVAY NGDKLIELFG ASGNNLKDVD LAIPVGLFTC VTGVSGSGKS TLINDTFYKI
AHRQLNGATV DEPAPYKSIE GMDHCDKVVD IDQSPIGRTP RSNPATYTGI FTPIRELFAA
TQESRTRGYK PGRFSFNVKG GRCEACQGDG LIKVEMHFLP DVYVPCDSCK SKRYNRETLE
VKYKGKSIHE VLSMTVEEAR PFFDAVPAIA RKLQTLIEVG LSYISLGQSA TTLSGGEAQR
VKLAKELSKR DTGQTLYILD EPTTGLHFAD IQLLLDVLHR LKAHGNTIVV IEHNLDVIKT
ADWIIDLGPE GGSGGGTILV TGTPEQVAEH EASHTARFLK PLLEK
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