Gene Ssed_4015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4015 
SymboldipZ 
ID5611920 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4914500 
End bp4916335 
Gene Length1836 bp 
Protein Length611 aa 
Translation table11 
GC content50% 
IMG OID640934970 
Productthiol:disulfide interchange protein precursor 
Protein accessionYP_001475747 
Protein GI157377147 
COG category[C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG4232] Thiol:disulfide interchange protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000000287322 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAAAAAAA CTCTTACCCT AGCTCTTACT TTAATTTTTT CTACCCTACT TCTGTTATCG 
CCTTTGGCGC ACAGTGAAGG CGTTTTCAGC AGCAGTAAGT TCAGCTTCCT CAAAGATGAA
CCTAAGCTGA TGCCTGTCGA TGAAGCCTTC GTTTTCGACT TCAAGCAGCA AGGCGAACAG
CTGAAAGTAA GCTGGGTCAT CGCCGACGGC TACTACATGT ACCGTGACAA GCTAAAGTTT
GAAGCAGACG GTGCGACATT GGGTGAAATA GCGCTCCCTA GTGGCAAGGC GCACAGTGAT
GAATATTTTG GCGAGCAGGA GGTTTACTAC TCATACGTTG AGATCCCCAT CGCTATCAGG
GAAGCTGTCG AAGGCGGCAC TGTGACCGTG ACCTTTATGG GCTGTGCCGA AGGTACATTG
TGTTATCCGC CAACCAAGAA AACTGCTTTA CTGAGTAAAA TTGAAGCCAA TGATGGCTTA
CTGAGCAATG AGCTTCCGAC AGGTGAGAAA CTTGCAAAGG CTCAAGTTAA TTCTGAAGCC
GGCCAAACTC CTATCACGCA ACAAGATAGC CTGAGCAATA TGTTATCGGG TGACAGTTTA
CTCTGGACTC TGGTGATCTT CTTCGGCCTG GGGATTGGCC TCGCGCTCAC CCCTTGTGTC
TTCCCTATGT ACCCTATTCT ATCCGGGATT ATCGTTGGAC AGGGAGAAAA GCTCTCTACG
GCTAAGGCAT TCAGCCTCTC TATGGTCTAC GTACAGGGCA TGGCAATAAC CTACTCACTG
CTCGGTTTAG TTGTCGCGTC GGCGGGTATG AAATACCAGG CAGCCCTGCA ACACCCGGCC
GTACTCATTG TATTAGCCGT ACTCTTCTTC GTGTTGAGCT TGTCCATGTT TGGCCTGTAT
GAACTCAAAT TACCGTCCAG CTGGCAGGAG AAGATGAACC GTTTCTCCAA CAACCAGAAA
GGCGGCAATG TTATTGGCGT CTTCATCATG GGGATTATCT CGGGTCTGGT CGCCTCTCCA
TGTACTACCG CGCCACTATC CGGTGCCTTG GTCTATGTTG CACAAACCGG TGACCTGCTT
CAGGGCTTCC TGGCCCTCTA CGTACTCAGC ATGGGTATGG GATTACCGCT ACTTATCATA
GGCACCTCAG GTGGTAAGTT GCTTCCAAGA GCGGGGAGCT GGATGGATGT CATCAAGACG
GTCTTTGGCT TCCTGCTGAT CGCCGTGTCC ATCGTTATGA TAGGCAGGAT CTGGCCAGAC
TTCCTCTCCG ATCTTCTCTG GTCGATTTGG GGCGTGGCAT TGGTAGGATA CCTGATGCAC
CAGAACAAAC TCACCGATTT TAACTGGAAG CAAACGGTTC GCTCTGTTCT GTTGACCCTG
ATGCTATTAG GTAGCTTCTC ATATGGGCTA CAAGCCGTAA TGACAAAACT TGGCGTTCAG
GCTCAGACTC AGGTCGCCAC CGAACAGGCT CATGGACATA AACGCATCAA GTCTGTCGCC
GACCTAAAAG CGGAGGTCGA AGCGGCCTCG GCTCAGGGCA AGCCGGTGAT GTTAGATCTC
TATGCCGACT GGTGCGTAGC CTGTAAAGAG TTCGAAGCAG TGACCTTTAA GGACCCTGCA
GTGCAGACTC GTTTGGCACA GATAGTATTT CTTCAGGCCG ATGTCACCAA GAATGATAGC
TTAGATATCG AGCTTCTGGA GAGCTACGAT GTACTGGGTC TCCCTACCTT GCTGATGTTT
GATGCCGATG GCGAGCTTCG TAACGATCTA CGCGTCACCG GCTTTATGAA GCCCGACGCC
TTCGCTGCTC ACTTAGATAT ATTACTGAAA AAATAA
 
Protein sequence
MKKTLTLALT LIFSTLLLLS PLAHSEGVFS SSKFSFLKDE PKLMPVDEAF VFDFKQQGEQ 
LKVSWVIADG YYMYRDKLKF EADGATLGEI ALPSGKAHSD EYFGEQEVYY SYVEIPIAIR
EAVEGGTVTV TFMGCAEGTL CYPPTKKTAL LSKIEANDGL LSNELPTGEK LAKAQVNSEA
GQTPITQQDS LSNMLSGDSL LWTLVIFFGL GIGLALTPCV FPMYPILSGI IVGQGEKLST
AKAFSLSMVY VQGMAITYSL LGLVVASAGM KYQAALQHPA VLIVLAVLFF VLSLSMFGLY
ELKLPSSWQE KMNRFSNNQK GGNVIGVFIM GIISGLVASP CTTAPLSGAL VYVAQTGDLL
QGFLALYVLS MGMGLPLLII GTSGGKLLPR AGSWMDVIKT VFGFLLIAVS IVMIGRIWPD
FLSDLLWSIW GVALVGYLMH QNKLTDFNWK QTVRSVLLTL MLLGSFSYGL QAVMTKLGVQ
AQTQVATEQA HGHKRIKSVA DLKAEVEAAS AQGKPVMLDL YADWCVACKE FEAVTFKDPA
VQTRLAQIVF LQADVTKNDS LDIELLESYD VLGLPTLLMF DADGELRNDL RVTGFMKPDA
FAAHLDILLK K