Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4015 |
Symbol | dipZ |
ID | 5611920 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4914500 |
End bp | 4916335 |
Gene Length | 1836 bp |
Protein Length | 611 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640934970 |
Product | thiol:disulfide interchange protein precursor |
Protein accession | YP_001475747 |
Protein GI | 157377147 |
COG category | [C] Energy production and conversion [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4232] Thiol:disulfide interchange protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000287322 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAAAAAA CTCTTACCCT AGCTCTTACT TTAATTTTTT CTACCCTACT TCTGTTATCG CCTTTGGCGC ACAGTGAAGG CGTTTTCAGC AGCAGTAAGT TCAGCTTCCT CAAAGATGAA CCTAAGCTGA TGCCTGTCGA TGAAGCCTTC GTTTTCGACT TCAAGCAGCA AGGCGAACAG CTGAAAGTAA GCTGGGTCAT CGCCGACGGC TACTACATGT ACCGTGACAA GCTAAAGTTT GAAGCAGACG GTGCGACATT GGGTGAAATA GCGCTCCCTA GTGGCAAGGC GCACAGTGAT GAATATTTTG GCGAGCAGGA GGTTTACTAC TCATACGTTG AGATCCCCAT CGCTATCAGG GAAGCTGTCG AAGGCGGCAC TGTGACCGTG ACCTTTATGG GCTGTGCCGA AGGTACATTG TGTTATCCGC CAACCAAGAA AACTGCTTTA CTGAGTAAAA TTGAAGCCAA TGATGGCTTA CTGAGCAATG AGCTTCCGAC AGGTGAGAAA CTTGCAAAGG CTCAAGTTAA TTCTGAAGCC GGCCAAACTC CTATCACGCA ACAAGATAGC CTGAGCAATA TGTTATCGGG TGACAGTTTA CTCTGGACTC TGGTGATCTT CTTCGGCCTG GGGATTGGCC TCGCGCTCAC CCCTTGTGTC TTCCCTATGT ACCCTATTCT ATCCGGGATT ATCGTTGGAC AGGGAGAAAA GCTCTCTACG GCTAAGGCAT TCAGCCTCTC TATGGTCTAC GTACAGGGCA TGGCAATAAC CTACTCACTG CTCGGTTTAG TTGTCGCGTC GGCGGGTATG AAATACCAGG CAGCCCTGCA ACACCCGGCC GTACTCATTG TATTAGCCGT ACTCTTCTTC GTGTTGAGCT TGTCCATGTT TGGCCTGTAT GAACTCAAAT TACCGTCCAG CTGGCAGGAG AAGATGAACC GTTTCTCCAA CAACCAGAAA GGCGGCAATG TTATTGGCGT CTTCATCATG GGGATTATCT CGGGTCTGGT CGCCTCTCCA TGTACTACCG CGCCACTATC CGGTGCCTTG GTCTATGTTG CACAAACCGG TGACCTGCTT CAGGGCTTCC TGGCCCTCTA CGTACTCAGC ATGGGTATGG GATTACCGCT ACTTATCATA GGCACCTCAG GTGGTAAGTT GCTTCCAAGA GCGGGGAGCT GGATGGATGT CATCAAGACG GTCTTTGGCT TCCTGCTGAT CGCCGTGTCC ATCGTTATGA TAGGCAGGAT CTGGCCAGAC TTCCTCTCCG ATCTTCTCTG GTCGATTTGG GGCGTGGCAT TGGTAGGATA CCTGATGCAC CAGAACAAAC TCACCGATTT TAACTGGAAG CAAACGGTTC GCTCTGTTCT GTTGACCCTG ATGCTATTAG GTAGCTTCTC ATATGGGCTA CAAGCCGTAA TGACAAAACT TGGCGTTCAG GCTCAGACTC AGGTCGCCAC CGAACAGGCT CATGGACATA AACGCATCAA GTCTGTCGCC GACCTAAAAG CGGAGGTCGA AGCGGCCTCG GCTCAGGGCA AGCCGGTGAT GTTAGATCTC TATGCCGACT GGTGCGTAGC CTGTAAAGAG TTCGAAGCAG TGACCTTTAA GGACCCTGCA GTGCAGACTC GTTTGGCACA GATAGTATTT CTTCAGGCCG ATGTCACCAA GAATGATAGC TTAGATATCG AGCTTCTGGA GAGCTACGAT GTACTGGGTC TCCCTACCTT GCTGATGTTT GATGCCGATG GCGAGCTTCG TAACGATCTA CGCGTCACCG GCTTTATGAA GCCCGACGCC TTCGCTGCTC ACTTAGATAT ATTACTGAAA AAATAA
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Protein sequence | MKKTLTLALT LIFSTLLLLS PLAHSEGVFS SSKFSFLKDE PKLMPVDEAF VFDFKQQGEQ LKVSWVIADG YYMYRDKLKF EADGATLGEI ALPSGKAHSD EYFGEQEVYY SYVEIPIAIR EAVEGGTVTV TFMGCAEGTL CYPPTKKTAL LSKIEANDGL LSNELPTGEK LAKAQVNSEA GQTPITQQDS LSNMLSGDSL LWTLVIFFGL GIGLALTPCV FPMYPILSGI IVGQGEKLST AKAFSLSMVY VQGMAITYSL LGLVVASAGM KYQAALQHPA VLIVLAVLFF VLSLSMFGLY ELKLPSSWQE KMNRFSNNQK GGNVIGVFIM GIISGLVASP CTTAPLSGAL VYVAQTGDLL QGFLALYVLS MGMGLPLLII GTSGGKLLPR AGSWMDVIKT VFGFLLIAVS IVMIGRIWPD FLSDLLWSIW GVALVGYLMH QNKLTDFNWK QTVRSVLLTL MLLGSFSYGL QAVMTKLGVQ AQTQVATEQA HGHKRIKSVA DLKAEVEAAS AQGKPVMLDL YADWCVACKE FEAVTFKDPA VQTRLAQIVF LQADVTKNDS LDIELLESYD VLGLPTLLMF DADGELRNDL RVTGFMKPDA FAAHLDILLK K
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