| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4008 |
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| Symbol | |
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| ID | 5610430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4907148 |
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| End bp | 4908212 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934963 |
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| Product | porin |
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| Protein accession | YP_001475740 |
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| Protein GI | 157377140 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000296209 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000599213 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAAAA CGGTTCTGTC TGCATCAATC ATATCGACAC TAGCAATCAC CTCTTTCTCA
GCTCTCGCTG ACGGCCCAAA TTTCTATGGC CGTGCAGATC TTGCATTCAC CAATTCTGAT
CTCGGTGTCG CTACACAAAA CCAGAAATCG GGTACCATAA TTGAAAACAA CTTCTCATGG
TTAGGTGTTA AAGGCACCGA GAAGATCAAT GAAAATTTTG AAGTGATCTA CCAGATGGAG
TTTGGCGTGA CGAACTTCGA CAACTCAGGA GACACGTTCG GAGCCCGTAA CACCTACTTA
GGCCTTAAGA GCGTTGCCGG TACTGCCCTT GTTGGTCGTA ATGACACCGT ATTCAAAGCC
GCTGAAGGTG GCTTCGATCT CTTCGGTAAT ACTAACTCAG ATATCGATCT TCTTGCTGCC
GGACAGTCTC GCAGCGCCGA TGGTATCAGC TATTACTCAC CAAAAATTGC CGACTTAGTG
ACATTCAACG CAACTTACCT GGTTGAAGAC AACTATGTCT CCTATGATGA GACAACCAAT
GACCGCATCG ATGCGGGCAA CATGTATGCG CTAAGTGCCA CCATAGGTGA CAAAGCGCTT
AAGGCGCAAA ACTACTTCGT GTCTGGTGCC TATACCGATG GTATCGACGA TATCAAGGCC
TATCGCGGCG TGGCACAAGT GAAACTGGGT GATGTGATCT TAGGTGGCTT CTATCAGAAC
AGTGAACACT TAGACGATAA GTATTCAAAC CTGGAAGGCG ACACTTACTT CGTTAACGCC
GCTTACGTTA TGGGTAACCT GAAGTTAAAA GCCATGTATG GTAACGACAA CTCGGGTCTT
GGTAAGTATG TGAGCAGATT CGTTGGCAAT ACCGAGGGCG GAGCGATGGA GACGGTGTCT
AATGTCGATC TGCAGCAGTT CAGTGTCGGT GCAGACTACC GTGTCAGCAA GAGCACACTA
TTTTATGGTC ACTACACTAA GTTCGATGGT GACATGGTGC TAAACAGTGT CACGCAAAGC
CTGAATGACG ATATCATCAC TGTCGGTATG CGTTACGACT TCTAA
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| Protein sequence | MKKTVLSASI ISTLAITSFS ALADGPNFYG RADLAFTNSD LGVATQNQKS GTIIENNFSW
LGVKGTEKIN ENFEVIYQME FGVTNFDNSG DTFGARNTYL GLKSVAGTAL VGRNDTVFKA
AEGGFDLFGN TNSDIDLLAA GQSRSADGIS YYSPKIADLV TFNATYLVED NYVSYDETTN
DRIDAGNMYA LSATIGDKAL KAQNYFVSGA YTDGIDDIKA YRGVAQVKLG DVILGGFYQN
SEHLDDKYSN LEGDTYFVNA AYVMGNLKLK AMYGNDNSGL GKYVSRFVGN TEGGAMETVS
NVDLQQFSVG ADYRVSKSTL FYGHYTKFDG DMVLNSVTQS LNDDIITVGM RYDF
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