Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4007 |
Symbol | |
ID | 5610429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4905837 |
End bp | 4906652 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640934962 |
Product | UBA/ThiF-type NAD/FAD binding protein |
Protein accession | YP_001475739 |
Protein GI | 157377139 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1179] Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.751788 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000536443 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGGAAGAAT TGGTGCTTTC TGAAGCATAT ATAAATCGAT TTGCAGGTAT TGGCCGTTTA TATGGTCAAA AGGCATTAGC TCAATTTGCG CAATCACATG TTGCCGTTGT CGGAATCGGC GGTGTGGGAA CCTGGGTCGC CGAATCGTTG GCAAGAAGTG GGGTCGGTGA GATCACCTTG ATCGATCTCG ATGATATCTG CGTGACCAAT ACCAACCGCC AAATTCATGC CCTGAAAGAG ACGATCGGTG AGTCAAAGGT TGAGGTGATG GCTGAGCGTA TCTTGCAGAT CAACCCGGAG TGTAAGGTCA ACCAGGTGGA GGACTTCATT ACTGTGGAAA ATCTGGGGGA GTACTTCATC GGCAAGAAGC AGGACGGCAC GCTTGATTAT GTGGTCGACT GTATCGATGC CGTAAAACCC AAGGCGGCAC TCATTGCCTG GTGTAAGAGG CAGAAGCTTC CCATAGTGAC AGTAGGTGGT GCGGGCGGTC AGATCGACCC TACGCAGGTT CAGGTAGCGG ATTTAGCAAA AACATACCAA GACCCGCTAT TGGCAAAAGT GCGAAACCTG CTTCGCCGGG AGCATAATTT TTCTAAGAAT GTGCAACGAC GGTTCAGTAT TGAAGCCGTT TTCTCTACCG AGCAACTGGT TTATCCCCAA GCAGATGGCA GCGTATGCAA TACCAAGGCG AATGCCGATG GCAGCATGCG TATGGACTGT GCATCCGGCT TTGGTGCGGT GACTGTGGTT ACCGGTACAT TCGGATTTGT TGCCGCGAGC CGGGTGCTGA CTAAGCTGGC AAGAAAAGTG CTCTAA
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Protein sequence | MEELVLSEAY INRFAGIGRL YGQKALAQFA QSHVAVVGIG GVGTWVAESL ARSGVGEITL IDLDDICVTN TNRQIHALKE TIGESKVEVM AERILQINPE CKVNQVEDFI TVENLGEYFI GKKQDGTLDY VVDCIDAVKP KAALIAWCKR QKLPIVTVGG AGGQIDPTQV QVADLAKTYQ DPLLAKVRNL LRREHNFSKN VQRRFSIEAV FSTEQLVYPQ ADGSVCNTKA NADGSMRMDC ASGFGAVTVV TGTFGFVAAS RVLTKLARKV L
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