| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4005 |
|---|
| Symbol | |
|---|
| ID | 5610427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4902667 |
|---|
| End bp | 4904304 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640934960 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001475737 |
|---|
| Protein GI | 157377137 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000706341 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACAT TTACAGGCCG GTTAATTAAA AGCCCCATAG GTCGAAAGCT GACTTTGTCG
ATAGTCTTGT TTAGCTCCAT CATTACTCTA CTGACAACAG GCTTTCAACT CGTCAATGAC
TATAAGGGCG ATGTCGATAG AATATCTCGT CAATTTACCA GTATAGAAAA AGTTAATTTG
GATGTACTGG CTGCCAGTAT CTGGGTCATC GACGAACGTT TAATCAACAC TCAACTCAAT
GGCCTGATTC AATTGCCTGA TATTACCTAC ATCTCAATTA ATGATGATAG TGGTCAGATA
TGGATTGCCG GTACACCTAC ACCAGAAAAT ACGATAGAGA AGTCTTTTGA GCTATTTTAC
AGCTCAGGTA GTGACAGCAT CCCCGTAGGT ACCCTATTAG TCCAGGCAGA TCTGAAAGCC
GTTTATGACA AACTACTGGA CCGCGCCATT ATTATCTTAC TTTCAAATGC GATAAAAACC
TTTATCGTTG CTGGCTTCAT ACTATTTTTA GTCTGGTATT TTGTAACGCG ACATCTGCAC
AGTTTAAGTC AGTATTGCCA ACAGATAGAT CTCGACGCCC CTGCAATTCC CCTTACTTTT
GATAAAAATC ATAAGAAAGA GGATGAGTTC CAGCAAGTAT CACATGCAAT TAATGACATG
CAAAATCAAA TTCGTCGCTC CTTTTCCGAG CTAAAAAAGT CTAAACAGGA ACTTCAGGAG
TCCCTGGCTG ATAGAGAGCG TTTACTCGAG TTAGAAACCA GCTACAAGGA TGAACTAGCG
AGACAAGTGA AGGAGCGCAC CCAAGAGCTG GAGCAATCTT TACTCGTACT TAAGCGTGCC
CAGGAAGTGC TGGTTGAACA AGAGAAGATG GCCGCTTTAG GTGGTCTGGT ATCTGGTGTC
GCACATGAAA TAAACACACC CATTGGGATC TGTTTGACGG CAGCCAGCTC TCAACTCATT
CACATCCAAG AGTTAATCAA GTTAATCCAC AGTGAAAATG CGACTCTGGA GGAGATCAAT
TCTATTCTGG AAGAGTATCA AGAGAGTTGT GAGCTAATCG TCAGTAATAT TACGCGTGCA
AGCACCCTTA TTCAAAAGTT TAAAACCGTT GCCGCACAGC AAAGTTTAGA AGAAAAACGC
AGCTTCAATT TAAAACAGAG TCTGGTGGAG AATCATGAAG CCATGAAGAT TCTATTCGGT
GAGCAACATG TGGATGTTCA ATTCGACCTG GATCCGGATC TCGACATAAC AGCCAACCAA
AGCCTATTAA AGCAGATCAT CACCAATATC CTGTCAAATG CTTACTCACA CGCCTTCAAG
CAAATGGAAA ATGGCATCAT TTTAATCAAG GCTCAATTGA AAGAAGATCA ACTCCATATT
TCAATACAAG ATAATGGTTC TGGTATATCG AAAGAGGCTT CGACACATAT TTTTGAGCCA
TTTTATACCA CTAACCGCAG TCAGGGAGGG ACGGGTCTGG GCTTATCTGC TGCATTTAAT
GCTGCCACTT TATTAAAGGG GAATATCAAA TTTGAACCCG AGAGTGACTT GGGTGGAGCT
AGCTTCCTTA TCTCTTTTCC TGTAACGGTT CCGCATCATG ATTCAGGCAC CGACTTTCTA
CCTGAAACTT TCAGCTGA
|
|---|
| Protein sequence | MQTFTGRLIK SPIGRKLTLS IVLFSSIITL LTTGFQLVND YKGDVDRISR QFTSIEKVNL
DVLAASIWVI DERLINTQLN GLIQLPDITY ISINDDSGQI WIAGTPTPEN TIEKSFELFY
SSGSDSIPVG TLLVQADLKA VYDKLLDRAI IILLSNAIKT FIVAGFILFL VWYFVTRHLH
SLSQYCQQID LDAPAIPLTF DKNHKKEDEF QQVSHAINDM QNQIRRSFSE LKKSKQELQE
SLADRERLLE LETSYKDELA RQVKERTQEL EQSLLVLKRA QEVLVEQEKM AALGGLVSGV
AHEINTPIGI CLTAASSQLI HIQELIKLIH SENATLEEIN SILEEYQESC ELIVSNITRA
STLIQKFKTV AAQQSLEEKR SFNLKQSLVE NHEAMKILFG EQHVDVQFDL DPDLDITANQ
SLLKQIITNI LSNAYSHAFK QMENGIILIK AQLKEDQLHI SIQDNGSGIS KEASTHIFEP
FYTTNRSQGG TGLGLSAAFN AATLLKGNIK FEPESDLGGA SFLISFPVTV PHHDSGTDFL
PETFS
|
|---|
| |