| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3972 |
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| Symbol | |
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| ID | 5613974 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4857896 |
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| End bp | 4858627 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934926 |
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| Product | 16S ribosomal RNA methyltransferase RsmE |
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| Protein accession | YP_001475704 |
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| Protein GI | 157377104 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAATCC CAAGAATATA CCAAGCATCC ACCTTCACGG TAGGTATGTC AGTTGCGCTC
GATGATGAAG CGGCCTCTCA TGTTGGTCGT GTACTGCGCA TGTCCAGCGG TGAACAGGTG
AGCCTGTTTA ATGGTGACGG TAACGAATAC CTTGCGCAGA TAGAGTCCGC CAGTAAGAAA
AATGTTCAAG TCACCATCCT TTCATCTGTA GCTAATGAAA GCGAGTCTCC GCTACACCTG
CATTTAGGTC AGGTGATCTC ACGTGGCGAT CGTATGGACT TTACCATTCA GAAGTCTGTA
GAGCTGGGAG TGAATACCAT TACGCCACTT TTTTCTGAAC GCTGTGGCGT AAAGCTATCG
GGCGAACGAT TGGAAAAGAA AATTCATCAA TGGCAAAAGA TCGTTATTGG GGCCTGTGAG
CAGTCGGGTC GTAGTCTTGT TCCTCAAGTA AGACCCGCGA TGTCTTTAGA GGCCTGGAGC
GCAGAACAGA CAGACTCTCT TAAATTAAAC TTACACCCGA GAGCGGCACA CGGTATTGGT
GGATTAACCC TTCCTGAGCC AAGAGTCAGG CTGTTGATCG GGCCCGAAGG TGGCCTGTCT
GAAACCGAAA TATTGATGAC AGAACAACAT GCCTTTACCG ATGTATTATT AGGCCCCCGG
GTTTTGAGAA CCGAAACGGC AGCCTTAACG GCAATAAGTG CACTGCAACT GAAATTTGGT
GATCTGGGTT AA
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| Protein sequence | MRIPRIYQAS TFTVGMSVAL DDEAASHVGR VLRMSSGEQV SLFNGDGNEY LAQIESASKK
NVQVTILSSV ANESESPLHL HLGQVISRGD RMDFTIQKSV ELGVNTITPL FSERCGVKLS
GERLEKKIHQ WQKIVIGACE QSGRSLVPQV RPAMSLEAWS AEQTDSLKLN LHPRAAHGIG
GLTLPEPRVR LLIGPEGGLS ETEILMTEQH AFTDVLLGPR VLRTETAALT AISALQLKFG
DLG
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