| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3970 |
|---|
| Symbol | |
|---|
| ID | 5614207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4856335 |
|---|
| End bp | 4856910 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640934924 |
|---|
| Product | protein of unknown function DUF335, SprT |
|---|
| Protein accession | YP_001475702 |
|---|
| Protein GI | 157377102 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3091] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAGT TATTCAAATC TGTGACGAGT ACCGATCCGT CTCCCGATAG CGTTTCGACT
CTCAAGCCGC ATACACCTGC CTGCTATGAA TTTGATGCTG AACTTCACAC TCGTGTCGCT
CAGCAGGTGC TGGAGTGCTA TCAAATAGCC GAAAAGCATC TGAATCTTCA TTTTCCACGT
CCGGAAATCA ACTTCAAGCT AAGAGGAAGA AGCGCCGGAA CGGCTCACCT GCAGCTCAAT
AAACTCAGGT TTAACCCGGT ACTGCTCGCT GAAAACAGTG ATGCCTTTCT TAAAGAGGTG
ATCCCACACG AGATCTGCCA TCTGCTCGCC TATCGGCTCT ATGGCAAGGT AAAACCCCAT
GGCAAAGAGT GGCAGTCCCT GATGGTCGGT GTCTTTGGAG TTCAGCCAAG TACGACCCAT
AGTTTGGATA CTCAATCGGT CGACGGACAA AGATTCGATT ATCACTGTGG ATGCGGACCC
GTAAAACTCA GTATCAGACG TCATAACAAG GTCATACGGG GCGAGACTCA ATATAGATGC
AGGCGATGTA AGAGAGAGTT AACCAGGGCA GCTTAG
|
|---|
| Protein sequence | MFKLFKSVTS TDPSPDSVST LKPHTPACYE FDAELHTRVA QQVLECYQIA EKHLNLHFPR
PEINFKLRGR SAGTAHLQLN KLRFNPVLLA ENSDAFLKEV IPHEICHLLA YRLYGKVKPH
GKEWQSLMVG VFGVQPSTTH SLDTQSVDGQ RFDYHCGCGP VKLSIRRHNK VIRGETQYRC
RRCKRELTRA A
|
|---|
| |