| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3969 |
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| Symbol | |
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| ID | 5614206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4855081 |
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| End bp | 4856253 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934923 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475701 |
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| Protein GI | 157377101 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG2039] Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAAT CCGTGATGGC GATTGCAGCT GTAGGCGCTC TGGCCTTTAG CATCGCCTGT
TCAGCCACCC CTGATGCTAT GACCCCCCTG AATATTGAAG AGCTGAGACT CGAAGCAGCA
AACCAGACGA TACCCGATGT TGTCACTCGC TATCAGGCCT TAGTTGAGAG CCTGGACAAT
AAATACCAGC AGCAAACAGA CGAGCTTGAA ATGACCAAGA TGGTCGCACG TCAGGGTGAA
AGGTTATGGC AACAAGCCGT TAGAGACATA CAATCAGGCA GTATCGATGA CAGGCCGCTC
TACTGGAGTC GCCTCGCCAT GCAGCGTCAA TTGAAGCGCA GTCGCCCCGC ATTTAACATG
GCCTCCTGGC AGCAAGAGGT TTTACTGAGC GCCGTTGAAA AATCTTCCAG AGGCTTTAGC
AATGTGCAAT TCTCGAATGA CACCGAGGTA AAGATACTGC TAACAGGTTT CGATCCCTTC
TTCCTCGATC GTAATGTCGG CCAGAGTAAC CCCTCGGGCT TAGTTGCCTT GTCCTTAGAT
GGTTTTGAAT TTTCCGCTAA CGGCAAGAAA GCACAGATTG AAACTGTGAT GATACCCGTT
CGTTTTGCCG ATTTTGATGA GGGAATAATA GAGTCACTAC TGACTCCTGT TTACCGTGAA
AACAGTGTAG ATATGATTAT TACTGTCAGC ATGGGCCGTG ATGATTTCGA TCTGGAGCGC
TTCCCGGGTC GAAACCGAAG TGCTGCCGCT CCCGATAATT TGAACCTGCT CACAGGTGCA
AATAAGCAAA AGCCAATGGC ACCTTTGTTT AATCGTAAAA CATTAAACGG CCCGGAATTT
GTCGAGTTCT CTCTCCCTGT GGCGGCGATG CAATCGGTAA GTGGTAATTG GAAAGTAAAT
GATAACCATA AGGTTACTTC GGTTGCTAAA GGTGAGTTTA CCGCTTCAAC GCTATCTGAA
CTTCAAAGCG AAACTTCGGT TGAAGGCTCA GGTGGAGGCT ACCTTTCCAA TGAAATATCT
TACCGTGCGG TACTGCTGGG GCAACAGTTT AATAGCAGTA TTGCAGTCGG ACACATACAT
ACCCCCAGAG TTTCAGGCCA CGACCCGAAA GTTGAAGCCG AGATCATGGC GCAGGTTAAA
GCTATGGTCA TAGCAGGCGC CGCTGCTCTA TAA
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| Protein sequence | MTKSVMAIAA VGALAFSIAC SATPDAMTPL NIEELRLEAA NQTIPDVVTR YQALVESLDN
KYQQQTDELE MTKMVARQGE RLWQQAVRDI QSGSIDDRPL YWSRLAMQRQ LKRSRPAFNM
ASWQQEVLLS AVEKSSRGFS NVQFSNDTEV KILLTGFDPF FLDRNVGQSN PSGLVALSLD
GFEFSANGKK AQIETVMIPV RFADFDEGII ESLLTPVYRE NSVDMIITVS MGRDDFDLER
FPGRNRSAAA PDNLNLLTGA NKQKPMAPLF NRKTLNGPEF VEFSLPVAAM QSVSGNWKVN
DNHKVTSVAK GEFTASTLSE LQSETSVEGS GGGYLSNEIS YRAVLLGQQF NSSIAVGHIH
TPRVSGHDPK VEAEIMAQVK AMVIAGAAAL
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