| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3967 |
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| Symbol | |
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| ID | 5614204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4848849 |
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| End bp | 4853402 |
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| Gene Length | 4554 bp |
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| Protein Length | 1517 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934921 |
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| Product | carbamoyl-phosphate synthase L chain, ATP-binding |
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| Protein accession | YP_001475699 |
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| Protein GI | 157377099 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.649829 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.326527 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGCA ACAATAAGCC CACAAACATG ACTCAAGCTC AATCTGCCGA TCCGCTTTTT
CTAAAAGCAG AGCACTTGGC ACAAGATTTT TCACTGTTTC CTGAGCACAG TAAACAGAGC
CTGGCCGAAG AGATTAAAGG TCTCTTAGGC GATGATACCA TCCAGTCAAA CTTGAAAGAG
TTAGAACTGT TAGATGTCGA TGGTTACGTG ACTAAGGTTA TTCAGCCTAC ATTAGATAAA
AACCGTCCGG GCGCAAAGCG CGTCATCGCG GATCTTAAAG GTAAGATCAT TGCCGAAACC
CATATGGGCC CTTTTTATAG TGCTGAGATC GAACTAAATT TCGGTACCCG CACTCGCCGC
CTGGGTTTTA TCGCGCAAGA GCGTACAACA GGAAATGGCG CCTGGATGCC AGAACATCAC
CTCGAGGCGT GTAAAGCTAT TCGTAAGTTC GCCGAACTGG CGATGCCCAT CATCTATCTT
ATCGACACCC CTGGTGCCGA CGCCGGTGAA ATTGCAAACA GTCAGAACCA AGCGCACACC
ATCTCTAAGG CGATTGCCGA GAGTGCCAAT GTTGACGTAC CTACGGTCGG TATCGTGATT
GGCGCCGGTT ATTCGGGGGG AGCGATCCCA TTAGCAGCGG CCAACATCTT GTTGTCACTT
CGTGATGGTA TTTTTAATAC CATTCAGCCT CAGGGCCTGC AGAGCATCGC TCGTAAGTAC
AACCTCTCTT GGCAAGAGTG TGCCAAATCT GTTGGTGTAT CGCCGGAAGA GCTATACACC
TCAGGTTGCA TCGACGGCAT CATCGATTTC TCTCCATCTG ATAAAGATGA GCGTCAGCAT
AACTTGCGCC GCGCTATTAT CAGTAGTGTA GAGGCGGTAG AGCAAGCCGC TGTTCAGTTT
GTTCGTGAGT CTGGTGATCT GCGTGAGCAT TATGATCGTA GTTTGACCCG TTTCCTTAGT
CCGTCTAAGA ATCTGGCTGC GCTTGAACAT CATGCCGAGC TTGCGGTGGC CAATAACCCA
ACGATGCACC TGAATCTGTT TGGTAGTGCC TATCGTTATT TGCGTTATTT GACGCTTCGC
AGCCGTATTC ACTCTATCTC TCAAGAGCAA TACGGTCGCC TCTCTAAGGT TAGCGTTCCG
GAAGGTGATC TGCTGGCTCG TATTCAGCAA GAGCAAGACA GAGTATTCCA GTCCTGGTTA
TCAAGCCCGG ATAAGCTGGT CTATGATGAA GAGCTCAATA AACTTTGGGG TAACTTCGTC
TCTAAGCGTG ATGATGTTTC TACCGAACGT AACATGCTGA CTCGTTTGAT CTTAGGTGAG
CCAAAAGAGA ATTATAAGAA AGCACGTAAG GCGCTGTTAT TTAATATCGG TTGGTCCCTG
TATCATCGTT GGAAAGGTAA TGCTGAAAAC AACTTTAAGG GATTGATCCG CTATCTTGAG
ACGCTCCCAT CGGAGGTGAC TCAAGCGGAT TGGCCTGAGC TGAACAAGTT AACCGTTCTC
GATGTTGTGA TTCACGATGA ACTTCGTGAA GACTTCATCT GGCAGTGCTA TAACATTCTT
ATCTTCAATG CGCTTTATGA CAATGTGGTG GGTAACCTCG CTTCTATTGC TAAAGAAGCC
ATGATGTCTA AGAGCCTCTC TCGTGCATCG GTTGATAACC TGTTGCACGA CTCTATCGAT
CGCGCCATTT CGACCCAAGA TACCGCGAAT GATAAGAGCA AGTTCTATAA GTGGCTGAAG
TTCTTCATGT CTCAGTCAAA CCGTGCCGAA CTGCTGACTA AAACTGAGCA GTGGAAGAGT
GTCGGTTTCC CTCAGTTGAA TGATAGTCTT TTCGTTATCC TGACCTACTT CTTCGAACGT
CTGCTACCAG AGTATTTCGA CAGCGAGAAA GAGAGCAGCG AATATACGGG TGCCATCAAC
CCTGTACGGA TCGGTCGTCG TAAAGACTTC TGGAACCGTC TCACCATGGG TTATCAGGAT
CTCTTGATCC AGAAAGTACT TCGTGATGAG AAGCGTACCG GTAAGATGAC TTGGGAAAAT
ATTACCGAGA AATTCTTTAC CGATTTCGAG GAAGTGAACG GCGATAAGAT GTCTGCCAAC
TTGCTTAACT TCCCGGGTTT CCGTCTATCT ATCGAAGATG CACTGGATAA GGGGATCCGT
CCTTGTGGTT TGATCACAGG TATGGCGGAT TTTGAGCACA ACGGCCAGCA GATGCGTGTC
GGTGTTGCCG TTTCTAACAC CGCATTCCAG GCCGGTGCCT TCGATATGGC CAGCGCCGAG
AAGTTCAGCG CGCTATTGAT TGAGTGTGCT AAGCGCAAAC TTCCGGTTAT CTGCTTTATC
AGCTCCGGCG GTATGCAGAC GAAAGAAGGG GCTGCGGCGC TATTCTCAAT GGCGGTAGTG
AACGACCGTA TCACGCGTTT CATCCGTGAT AACGAGCTGC CTGTATTGAT GTTTGGTTAT
GGTGATTGTA CCGGTGGTGC TCAGGCGAGT TTCGTGACTC ATCCTCTGGT TCAAACCTAC
TACCTGTCGG GTACCAATAT GCCGTTTGCG GGTCAAATGG TTGTGCCTGC ATATCTGCCA
TCGACGGCGA CGCTGTCTAA CTACCTGTCG AAAGTACCAG GTGCGATGAA CGCACTTGTG
TCGAACCCAT TCAGTAACAC CATTGATGAT CAGCTAAGCA GTATCGATCC TCTGATGCCT
AAGCCAACTG CTAAGGTTGA AGATGTTATT GCCAATGCGA TATCTACTTT GGTTCCTGAG
ATGATGGTTG CGGACGAAGA GATCGTTCAA GACGATCCTC GTGAGTTGAT GAAACCCATC
AACAAGGTCC TAGTTCATGC TCGTGGTTGT ACCGCGGTTA AGTTGATCCG TAAGGCTCAT
GATAACGATA TCGATGTGGT ATTGGTGGCA TCCGATCCGG ATATGACCTC TGTGCCAGCG
GAGATGTTGA AAGGTAACGA CAAGTTAGTT TGTATCGGTG GTAATACCTC CGATGAAAGT
TACCTCAATG CCTACTCTGT ATTGAAAGTT GCCGAGTATG AAAACGTCGA TGCGCTTCAC
CCGGGGATTG GTTTCCTATC TGAAAGCCCA CAGTTTGCTG CACTTTGTGT CAACAACGGT
GTTAACTTCG TTGGACCAAG CGTACACAGC ATGACAACTA TGGGTAACAA GTCTAACGCG
ATTAAGACTT CCCAGGCGCA GAATGTTCCT GTCGTTCCCG GTAGCCACGG TATCTTGACC
AACGCTGAGC AAGCGGTGAA CGTTGCCAAC GAAATTGGTT ACCCGGTACT GCTTAAAGCG
GTTCAAGGTG GTGGTGGTAA GGGAATTCAG ATCGTTGAAC GCTCTGCTGA TATGATCAGC
CTATTCCAGC AAACTTCAAC CGAAGCGGCT GCCGCATTTG GTAATGGCGA TCTCTATCTT
GAGAAATACG TTACTTCACT GCGTCACATC GAGGTTCAGT TACTACGTGA TAAGTTTGGT
AATACTAAGG TTCTGGGTCT TCGTGATTGT TCGGTGCAGC GTAACAACCA GAAGGTTGTC
GAAGAGTCTG GCTCGACTAT GCTACCGGTC GAACTTCAAG AGAAGGTGCT TGAGTATACT
CGTGCTCTTG GTGATGCGAC CGATTATATG GGGGCGGGTA CGGTTGAGTT CATCTATAAC
CTAGATGCTA ATGAAGTGTA CTTTATGGAG ATGAACACAC GTCTTCAGGT AGAGCATCCG
GTTACGGAAG CCACCTCGGG TATCGATATC GTGAGTGCTG GTTTTGATAT CGCAGCGGGC
CGCTCAATTG AAAATCTTGA GCCTCAGTCA ATCGGCTATG CTATCGAAGT GCGTGTTACC
GCAGAGAAGG CAGCATTAGA TAGCAATGGC GTTCTACAGT TACTGCCACA TCCTGGTGTG
ATCACTGAGT ATAAGATGCC AGAGCGTGAT GATATCGAGA TCATCTCTAT TGCCGGTGAA
GGTAAAGAGG TATCGCCATA CTATGACAGC TTAATCGCTC AGATTATCTG CCGTGGTGAG
AGCCGTGAAG ATGTGATCAA CAAGCTACAT GATTACCTCG CCGATCAGGT TGTCATTAAA
GGTATTGCGA CCAATATTCC ACTGCTGACT CGTATCCTGA AAGACGGCAC CTTCAACGAA
GGGGTTTATG ATACTAACTA TCTGCCGCGT TTCATGGCAG AGCTTGATGT ACCAGAGCTG
ATTGCCGAGA TGGAAGCCGC TGCAGAAACC GTCGGTGTCG ATACTGCGTC ACTGCGCGTC
GGTGAGAGTA ACGAGCTTAA GGTGATGGCA CAAGGTGCAG GTATCTTCTA TACCTCTCCA
GCGCCTGGTG AAGCCGACTT TGTTAAAGAA GGTGACATAG TTACTGCAGA TCAGACTTTA
GCGCTTACAG AGGCTATGAA GATGTTCTCT CAGCTAACTT TAGCCGGCTA TAACCGTCAA
GATGCAATCT TGTATCCTGA AGATAAGAAG TATCGTATCG AGCGAGTGCT TAACAGTAAT
GGGCAGCAGG TCTCTCAAGG TGACCTATTG TTTGTTGTTT CACCTGTTGA ATGA
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| Protein sequence | MTSNNKPTNM TQAQSADPLF LKAEHLAQDF SLFPEHSKQS LAEEIKGLLG DDTIQSNLKE
LELLDVDGYV TKVIQPTLDK NRPGAKRVIA DLKGKIIAET HMGPFYSAEI ELNFGTRTRR
LGFIAQERTT GNGAWMPEHH LEACKAIRKF AELAMPIIYL IDTPGADAGE IANSQNQAHT
ISKAIAESAN VDVPTVGIVI GAGYSGGAIP LAAANILLSL RDGIFNTIQP QGLQSIARKY
NLSWQECAKS VGVSPEELYT SGCIDGIIDF SPSDKDERQH NLRRAIISSV EAVEQAAVQF
VRESGDLREH YDRSLTRFLS PSKNLAALEH HAELAVANNP TMHLNLFGSA YRYLRYLTLR
SRIHSISQEQ YGRLSKVSVP EGDLLARIQQ EQDRVFQSWL SSPDKLVYDE ELNKLWGNFV
SKRDDVSTER NMLTRLILGE PKENYKKARK ALLFNIGWSL YHRWKGNAEN NFKGLIRYLE
TLPSEVTQAD WPELNKLTVL DVVIHDELRE DFIWQCYNIL IFNALYDNVV GNLASIAKEA
MMSKSLSRAS VDNLLHDSID RAISTQDTAN DKSKFYKWLK FFMSQSNRAE LLTKTEQWKS
VGFPQLNDSL FVILTYFFER LLPEYFDSEK ESSEYTGAIN PVRIGRRKDF WNRLTMGYQD
LLIQKVLRDE KRTGKMTWEN ITEKFFTDFE EVNGDKMSAN LLNFPGFRLS IEDALDKGIR
PCGLITGMAD FEHNGQQMRV GVAVSNTAFQ AGAFDMASAE KFSALLIECA KRKLPVICFI
SSGGMQTKEG AAALFSMAVV NDRITRFIRD NELPVLMFGY GDCTGGAQAS FVTHPLVQTY
YLSGTNMPFA GQMVVPAYLP STATLSNYLS KVPGAMNALV SNPFSNTIDD QLSSIDPLMP
KPTAKVEDVI ANAISTLVPE MMVADEEIVQ DDPRELMKPI NKVLVHARGC TAVKLIRKAH
DNDIDVVLVA SDPDMTSVPA EMLKGNDKLV CIGGNTSDES YLNAYSVLKV AEYENVDALH
PGIGFLSESP QFAALCVNNG VNFVGPSVHS MTTMGNKSNA IKTSQAQNVP VVPGSHGILT
NAEQAVNVAN EIGYPVLLKA VQGGGGKGIQ IVERSADMIS LFQQTSTEAA AAFGNGDLYL
EKYVTSLRHI EVQLLRDKFG NTKVLGLRDC SVQRNNQKVV EESGSTMLPV ELQEKVLEYT
RALGDATDYM GAGTVEFIYN LDANEVYFME MNTRLQVEHP VTEATSGIDI VSAGFDIAAG
RSIENLEPQS IGYAIEVRVT AEKAALDSNG VLQLLPHPGV ITEYKMPERD DIEIISIAGE
GKEVSPYYDS LIAQIICRGE SREDVINKLH DYLADQVVIK GIATNIPLLT RILKDGTFNE
GVYDTNYLPR FMAELDVPEL IAEMEAAAET VGVDTASLRV GESNELKVMA QGAGIFYTSP
APGEADFVKE GDIVTADQTL ALTEAMKMFS QLTLAGYNRQ DAILYPEDKK YRIERVLNSN
GQQVSQGDLL FVVSPVE
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