| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3966 |
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| Symbol | |
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| ID | 5613750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4847213 |
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| End bp | 4848583 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934920 |
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| Product | alpha-L-glutamate ligase |
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| Protein accession | YP_001475698 |
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| Protein GI | 157377098 |
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| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)
[COG4067] Uncharacterized protein conserved in archaea |
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| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000098482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0844879 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACA AAATTATTGT CGGTAGTGAA GAGTGGTGCG CTTTACCAGG TTTAGGCATC
AAGGCAGTCA AGGCTCGTGT CGATTCCGGA GCCAAGACAT CATCGCTTCA CGCAATCAAT
ATCTCTACGT TTAAACGTGA AGATGGCACT TGGGTCAGCT ATGAAGTCCA TCCGCTGCAA
GGCAGTCGAA AAGTGACTCT GCAGTGTGAG TCTAAGCTTA TCGACAGACG AGTGATCAAA
AGTTCTAACG GTGAAACCGA GAAGCGTTTC GTCGTACGTG AACAGCTTCA TTTGGGGGAG
CAATCCTGGG AGATTGAGCT GACACTGACT AACCGCGCCA ATATGGGTTA TCGCATGCTG
TTGGGTCGCG AGGCTATGGG GCAAAAGATC TTAGTGGACC CTTCAGCCAC TTGTTGTTTA
GGCGAAATGT CTGCCGAGCA GGTGAATGAA CTCTATGGCA AGCTTGTTGT TCCCAGTAGT
GGTTTGAAGA TAGGCTTAAT GGCGAGTAAT CCGGATCTGT ATAGTAATAA ACGCATCATG
GAAGCGGGTC AGCAACGCGG CCATGAAATG TACTTTCTCA ACGTTAAACA GTGTTATATG
AAGTTGGATG CGTCCGAGCC TGAGGTACAC TATCGTGGTG GACGTATTCT GAATGATCTC
GATGCAGTGA TTCCCAGAAT TCGTCCCAGT ATGACCTTTT ATGGTTGTGC CCTGACTCGC
CACTTTGAAA GTCTTGGTGT GATGGCGCTC AACAACTCGG AAGCGATCAC TCAATCCCGG
GATAAGTTGT TTTCTCTTCA GTTACTGCAG AAGAACAACC TGGATATTCC GACGAGCGGT
TTTGCTAATT CGCCGGCCGA TACAACCGAT CTTATCGATA TGGTTGGAGG TGCGCCTCTG
ATTGTTAAGT TGCTTGAAGG GACGCAGGGA AAAGGGGTTG TGCTGGCAGA AACCAGAAAG
GCCGCCGAGA GTGTGATCAA TGCGTTTAAG TCGCTAAAAG CGAACTTGTT GGTGCAGGAG
TTTATCAAGG AAGCACAAGG GAAAGATCTA CGCTGTTTTG TGATTGACGG TAAGATTGTT
GCGTCGATAG AGCGTACGGC GGCTCCGGGT GAGTTTAGAG CGAACATTCA TCAGGGGGGA
ACGGCTTCTA TTGTGCAGGT GACTCCGGAA GAGAAAAAGT TAGCCATTAA GGCCGCTAAA
ACCATGGGCC TTCAGGTTGC GGGTGTCGAT ATTATTCGTT CCAGTAAGGG ACCATTACTA
TTAGAGATTA ACTCGTCACC AGGGTTGGAA GGTATTGAAG CTGCAACGGG AATCGATGTG
GCCTCAGCCA TGATTGATTC TATCGAGAAG AAGTTAGGTT GGAAAAAATA A
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| Protein sequence | MSNKIIVGSE EWCALPGLGI KAVKARVDSG AKTSSLHAIN ISTFKREDGT WVSYEVHPLQ
GSRKVTLQCE SKLIDRRVIK SSNGETEKRF VVREQLHLGE QSWEIELTLT NRANMGYRML
LGREAMGQKI LVDPSATCCL GEMSAEQVNE LYGKLVVPSS GLKIGLMASN PDLYSNKRIM
EAGQQRGHEM YFLNVKQCYM KLDASEPEVH YRGGRILNDL DAVIPRIRPS MTFYGCALTR
HFESLGVMAL NNSEAITQSR DKLFSLQLLQ KNNLDIPTSG FANSPADTTD LIDMVGGAPL
IVKLLEGTQG KGVVLAETRK AAESVINAFK SLKANLLVQE FIKEAQGKDL RCFVIDGKIV
ASIERTAAPG EFRANIHQGG TASIVQVTPE EKKLAIKAAK TMGLQVAGVD IIRSSKGPLL
LEINSSPGLE GIEAATGIDV ASAMIDSIEK KLGWKK
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