| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3963 |
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| Symbol | |
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| ID | 5613747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4844395 |
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| End bp | 4845279 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934917 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475695 |
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| Protein GI | 157377095 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.144543 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.129841 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAGG TGTTTATTAT TTCGCAAAGA GAGGAAGCGC ACACGGATGC AGTTGCTACA
GGGATCGAGT TGGCCAGAGC GATGGATAAA CGCGCCGAAG TTTTTGCATA TAGCTTTGAA
TATTTCAGTG GTGCGGAATA CTATAATCCA CGCCTCGGCG CCGCCGCCCA ACAGAAAATA
ATGAAAGACC GTGCGGCTAA AATTGAGGAC GAGCTGCAGA CATTGAAGGC AGCAGATGTG
CCCGTACACA CAGTATGGAG TAAGGATCTG CATGAACATG CCTGTCATCA CTCTATACGT
CATGGTTTCG ATCTCATGGT AAAGGCGGTA CATCATGCGG AGCACTATCT TCCTGTCGAT
TGGAATTTGA TCCGTCATGT TAAAATTCCT CTTATGCTAC TGACTGATAA TCCCCTACAT
AGAGGAAATG CCATATTGAT GGCCGTCGAT CTCGGTAGTG ATAATGTGCT TAAACAGCAG
CTCAATCAGG CCGTTATCAG TCACGGCAAG GCATTAGCAA AAGCGACCGG TAGTAAGTTG
CACCTTGCTT TTGTGATCAG AGTACCCAGG GTGTTGCGGG ATATGGATCT GATCAACACC
AGTACAATAG TTAAAGATGC CTATCAGGAG CATCAGAAAC AGTTGGCTAA ATTGAATATG
GATCCTGAAT GTATACATAT CATCGCCGGG GATCCCGATC TCTGTCTCTA TGAACTCTCC
TGCCGTCTGA AAGCGCGTTA TCTGGTCCTT GGAGCCCGTC AGCGTCAAGG CATCTTGGGC
TATGTTATCG GTAATATGGC CGAGTCCATT CTCAGCAGAA CCCGCAGCAA TGTCCTGATT
ATTCCGGCCG ACGATCAGTT ATTGGCTCCC CTAAGTTCGG ATTAG
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| Protein sequence | MDKVFIISQR EEAHTDAVAT GIELARAMDK RAEVFAYSFE YFSGAEYYNP RLGAAAQQKI
MKDRAAKIED ELQTLKAADV PVHTVWSKDL HEHACHHSIR HGFDLMVKAV HHAEHYLPVD
WNLIRHVKIP LMLLTDNPLH RGNAILMAVD LGSDNVLKQQ LNQAVISHGK ALAKATGSKL
HLAFVIRVPR VLRDMDLINT STIVKDAYQE HQKQLAKLNM DPECIHIIAG DPDLCLYELS
CRLKARYLVL GARQRQGILG YVIGNMAESI LSRTRSNVLI IPADDQLLAP LSSD
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